Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G050100.1 | Wheat | cytosol | 56.57 | 21.79 |
| TraesCS7D01G059900.1 | Wheat | cytosol | 58.59 | 21.72 |
| Os07t0435100-01 | Rice | cytosol, plasma membrane, plastid | 48.48 | 17.98 |
| AT5G42040.1 | Thale cress | cytosol | 40.4 | 17.17 |
| EES13525 | Sorghum | cytosol | 44.44 | 16.48 |
| GSMUA_Achr11P... | Banana | cytosol | 43.43 | 16.1 |
| GSMUA_Achr1P21260_001 | Banana | cytosol | 43.43 | 16.1 |
| VIT_02s0025g02010.t01 | Wine grape | cytosol | 43.43 | 16.1 |
| CDY47840 | Canola | cytosol | 42.42 | 15.73 |
| CDY62022 | Canola | extracellular | 42.42 | 15.73 |
| CDY69533 | Canola | cytosol | 42.42 | 15.73 |
| KRH42301 | Soybean | nucleus | 42.42 | 15.73 |
| AT1G64520.1 | Thale cress | nucleus | 42.42 | 15.73 |
| Bra040915.1-P | Field mustard | cytosol | 42.42 | 15.73 |
| Zm00001d024319_P001 | Maize | cytosol, extracellular | 42.42 | 15.73 |
| Bra027705.1-P | Field mustard | cytosol | 42.42 | 15.73 |
| KRH58430 | Soybean | nucleus | 43.43 | 15.69 |
| Solyc08g082700.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 39.39 | 14.61 |
| PGSC0003DMT400031956 | Potato | cytosol | 39.39 | 14.61 |
| Zm00001d039483_P001 | Maize | cytosol | 44.44 | 13.58 |
| TraesCS2D01G424200.1 | Wheat | cytosol | 28.28 | 10.53 |
| Zm00001d019655_P001 | Maize | cytosol | 3.03 | 4.55 |
| Zm00001d040137_P001 | Maize | cytosol | 3.03 | 1.99 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G012200.1 | EnsemblPlantsGene:TraesCS4D01G012200 | Gene3D:1.25.40.990 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005838 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0019538 | InterPro:26S_Psome_Rpn12 |
| PANTHER:PTHR12387 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:5684962..5685660
Molecular Weight (calculated)
11280.5 Da
IEP (calculated)
7.604
GRAVY (calculated)
-0.540
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MHLKGTSASS SRITWTHVAV KLNEKGYDYL SINDAKQMFM FSSDKELQQY IAEEHPEWDV KGGRVLLQKA KESQPCKEIP AAPVINQTLG YARELERIV
001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV
Arabidopsis Description
RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.