Factsheet for Zm00001d039483_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d032798_P001
Zm00001d035750_P001
Zm00001d049892_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	Zm00001d032798_P001	AT3G01410.1	21798944
AT1G64520.1	Zm00001d035750_P001	AT3G01410.1	21798944
AT1G64520.1	Zm00001d049892_P001	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13525	Sorghum	cytosol	79.01	95.88
Zm00001d024319_P001	Maize	cytosol, extracellular	78.09	94.76
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	70.37	85.39
GSMUA_Achr11P...	Banana	cytosol	67.59	82.02
GSMUA_Achr1P21260_001	Banana	cytosol	67.28	81.65
VIT_02s0025g02010.t01	Wine grape	cytosol	66.98	81.27
KRH42301	Soybean	nucleus	66.98	81.27
KRH58430	Soybean	nucleus	67.59	79.93
TraesCS7A01G065500.1	Wheat	cytosol, golgi	65.43	79.4
TraesCS4B01G049700.1	Wheat	cytosol	65.12	79.03
TraesCS4D01G050100.1	Wheat	cytosol	62.65	78.99
TraesCS7D01G059900.1	Wheat	cytosol	64.81	78.65
TraesCS4A01G422100.1	Wheat	cytosol	64.81	78.65
TraesCS6B01G357900.1	Wheat	cytosol	63.58	77.44
PGSC0003DMT400031956	Potato	cytosol	63.58	77.15
AT1G64520.1	Thale cress	nucleus	63.58	77.15
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	63.27	76.78
CDY69533	Canola	cytosol	62.65	76.03
CDY62022	Canola	extracellular	62.65	76.03
CDY47840	Canola	cytosol	62.65	76.03
Bra040915.1-P	Field mustard	cytosol	62.65	76.03
Bra027705.1-P	Field mustard	cytosol	62.35	75.66
Zm00001d040137_P001	Maize	cytosol	32.41	69.54
AT5G42040.1	Thale cress	cytosol	48.77	67.81
Zm00001d019655_P001	Maize	cytosol	11.42	56.06
TraesCS4D01G012200.1	Wheat	mitochondrion	13.58	44.44
HORVU2Hr1G099580.8	Barley	nucleus	46.3	44.12

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.6.2.2.11	UniProt:A0A1D6MHN4	InterPro:CSN8_PSD8_EIF3K	GO:GO:0000502	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005838	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	InterPro:IPR000717	ProteinID:ONM28947.1	ProteinID:ONM28948.1	InterPro:PCI_dom
PFAM:PF10075	PFscan:PS50250	UniParc:UPI000844F2C9	EnsemblPlantsGene:Zm00001d039483	EnsemblPlants:Zm00001d039483_P001	EnsemblPlants:Zm00001d039483_T001
SEG:seg	:	:	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 8 homolog A

Coordinates

chr3:-:5499567..5507791

Molecular Weight (calculated)

36936.6 Da

IEP (calculated)

5.007

GRAVY (calculated)

-0.106

Length

324 amino acids

Sequence
(BLAST)

001: MDPKMTEVTQ MFARFKAAYA RNDLNTCVTL LSQLKVHLTQ FPSLPPLFQQ TPNIVEELKL AKSQICSKLF LTYVFVLMTK LSSDLVAEKI KRSLNCYAVL
101: LVTLPSTEQV LNSAQNISGD IYEHAVVLSV KLEDQDAFER DFCQLKPYYM DTCGIIPASP EEYPILGLNL LRLLVQNRIA EFHTELELLP AKALEHPCIK
201: HAVELEQSFM EGAYNRVLSA RQAVPHETYV YFIDLLAKTV RDEIAGCSEK GYDSLSVSDA KQMLMFSSDQ DLHEYITEEH PEWEIKNGAV FFQKAKESQP
301: CKEIPSLQLI NQTLSYAREL ERIV

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.