Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G64520.1 | Thale cress | nucleus | 79.83 | 69.66 |
| KRH42301 | Soybean | nucleus | 73.39 | 64.04 |
| KRH58430 | Soybean | nucleus | 74.68 | 63.5 |
| VIT_02s0025g02010.t01 | Wine grape | cytosol | 72.53 | 63.3 |
| PGSC0003DMT400031956 | Potato | cytosol | 69.96 | 61.05 |
| Os07t0435100-01 | Rice | cytosol, plasma membrane, plastid | 69.53 | 60.67 |
| Solyc08g082700.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 68.67 | 59.93 |
| GSMUA_Achr11P... | Banana | cytosol | 68.24 | 59.55 |
| EES13525 | Sorghum | cytosol | 67.81 | 59.18 |
| GSMUA_Achr1P21260_001 | Banana | cytosol | 67.81 | 59.18 |
| Zm00001d024319_P001 | Maize | cytosol, extracellular | 67.81 | 59.18 |
| TraesCS4B01G049700.1 | Wheat | cytosol | 64.81 | 56.55 |
| TraesCS7A01G065500.1 | Wheat | cytosol, golgi | 64.81 | 56.55 |
| TraesCS4A01G422100.1 | Wheat | cytosol | 64.38 | 56.18 |
| Zm00001d019655_P001 | Maize | cytosol | 15.88 | 56.06 |
| TraesCS7D01G059900.1 | Wheat | cytosol | 63.95 | 55.81 |
| TraesCS4D01G050100.1 | Wheat | cytosol | 61.37 | 55.64 |
| TraesCS6B01G357900.1 | Wheat | cytosol | 61.37 | 53.76 |
| Zm00001d040137_P001 | Maize | cytosol | 33.91 | 52.32 |
| Zm00001d039483_P001 | Maize | cytosol | 67.81 | 48.77 |
| TraesCS4D01G012200.1 | Wheat | mitochondrion | 17.17 | 40.4 |
| HORVU2Hr1G099580.8 | Barley | nucleus | 42.92 | 29.41 |
Protein Annotations
| Gene3D:1.25.40.990 | MapMan:19.2.6.2.2.11 | InterPro:26S_Psome_Rpn12 | EntrezGene:834209 | ProteinID:AED94758.1 | ArrayExpress:AT5G42040 |
| EnsemblPlantsGene:AT5G42040 | RefSeq:AT5G42040 | TAIR:AT5G42040 | RefSeq:AT5G42040-TAIR-G | EnsemblPlants:AT5G42040.1 | TAIR:AT5G42040.1 |
| EMBL:AY258413 | ProteinID:BAB08437.1 | InterPro:CSN8_PSD8_EIF3K | GO:GO:0000502 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005838 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008541 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0043161 | GO:GO:0043248 | InterPro:IPR000717 | RefSeq:NP_199019.2 | InterPro:PCI_dom |
| PFAM:PF10075 | PO:PO:0000293 | PFscan:PS50250 | PANTHER:PTHR12387 | UniProt:Q9FHY0 | Symbol:RPN12b |
| TMHMM:TMhelix | UniParc:UPI0001739570 | SEG:seg | : | : | : |
Description
RPN12BPutative 26S proteasome non-ATPase regulatory subunit 8 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHY0]
Coordinates
chr5:-:16813565..16814749
Molecular Weight (calculated)
26733.4 Da
IEP (calculated)
4.756
GRAVY (calculated)
-0.035
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPQLMEVSQ QFERFKAAFI IKDFDTCSSL LSQLKLFDHY LISLSLNALL LLTCALFFLC TRNRIPPSPQ ENLIMGLNLL RLLVQNRIAE FHTELGLLSS
101: ATLENPCIKH AVELEQSFME GAYNRVLSAR QTAPDETYVY FMDLLAKTIR DEIAGCSEKA YDHLSISEGC KMLLFSSDQQ LLTYVNEEHP EWEVKDGLVV
201: FQKTRETAPC KEIPSLQLIN QTLSYTRELE RIL
101: ATLENPCIKH AVELEQSFME GAYNRVLSAR QTAPDETYVY FMDLLAKTIR DEIAGCSEKA YDHLSISEGC KMLLFSSDQQ LLTYVNEEHP EWEVKDGLVV
201: FQKTRETAPC KEIPSLQLIN QTLSYTRELE RIL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.