CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH18596

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	KRH18596	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58430	Soybean	nucleus	98.5	95.99
VIT_02s0025g02010.t01	Wine grape	cytosol	89.14	89.14
GSMUA_Achr11P...	Banana	cytosol	85.02	85.02
Bra040915.1-P	Field mustard	cytosol	84.64	84.64
CDY47840	Canola	cytosol	84.64	84.64
CDY69533	Canola	cytosol	84.27	84.27
Bra027705.1-P	Field mustard	cytosol	83.9	83.9
CDY62022	Canola	extracellular	83.9	83.9
GSMUA_Achr1P21260_001	Banana	cytosol	83.9	83.9
AT1G64520.1	Thale cress	nucleus	83.52	83.52
PGSC0003DMT400031956	Potato	cytosol	83.15	83.15
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	82.77	82.77
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	82.4	82.4
EES13525	Sorghum	cytosol	82.02	82.02
Zm00001d024319_P001	Maize	cytosol, extracellular	81.27	81.27
TraesCS7A01G065500.1	Wheat	cytosol, golgi	77.15	77.15
TraesCS4B01G049700.1	Wheat	cytosol	76.78	76.78
TraesCS4D01G050100.1	Wheat	cytosol	73.78	76.65
TraesCS4A01G422100.1	Wheat	cytosol	76.4	76.4
TraesCS7D01G059900.1	Wheat	cytosol	76.4	76.4
TraesCS6B01G357900.1	Wheat	cytosol	74.16	74.44
AT5G42040.1	Thale cress	cytosol	64.04	73.39
Zm00001d039483_P001	Maize	cytosol	81.27	66.98
Zm00001d040137_P001	Maize	cytosol	34.08	60.26
Zm00001d019655_P001	Maize	cytosol	14.61	59.09
TraesCS4D01G012200.1	Wheat	mitochondrion	15.73	42.42
HORVU2Hr1G099580.8	Barley	nucleus	52.06	40.88

Protein Annotations

Gene3D:1.25.40.990	EntrezGene:100803720	MapMan:19.2.6.2.2.11	InterPro:26S_Psome_Rpn12	EMBL:ACUP02004796	InterPro:CSN8_PSD8_EIF3K
EnsemblPlantsGene:GLYMA_08G082000	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005838	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043161	GO:GO:0043248
UniProt:I1KRD4	InterPro:IPR000717	EnsemblPlants:KRH42301	ProteinID:KRH42301	ProteinID:KRH42301.1	InterPro:PCI_dom
PFAM:PF10075	PFscan:PS50250	PANTHER:PTHR12387	UniParc:UPI00023386D9	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:6187349..6191667

Molecular Weight (calculated)

30877.9 Da

IEP (calculated)

4.723

GRAVY (calculated)

-0.284

Length

267 amino acids

Sequence
(BLAST)

001: MDPKLKEVSQ LFDRFKASFL RNDFDNCSNL LSQLKVLLTG FRSLPPLFAD TPNAVHELTI ARDIYEHAVV LSVKIEDQDA FERDFFQLKP YYTDACNRLP
101: PSPQEYPILG LNLLRLLVQN RIAEFHTELE LLSSAALENP CIKHAVELEQ SFMEGAYNRV LSARQTVPHD TYVYFMDLLA KTVRDEIAGC SEKAYDYLSI
201: KDAKQMLLFS SDQELLEYIK EEHPEWEIKN DSVFFQKAKE SAPCKEIPSL QLINQTLSYA RELERIV

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.