Factsheet for Zm00001d024319_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d032798_P001
Zm00001d035750_P001
Zm00001d049892_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	Zm00001d032798_P001	AT3G01410.1	21798944
AT1G64520.1	Zm00001d035750_P001	AT3G01410.1	21798944
AT1G64520.1	Zm00001d049892_P001	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13525	Sorghum	cytosol	97.38	97.38
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	86.52	86.52
GSMUA_Achr11P...	Banana	cytosol	83.15	83.15
GSMUA_Achr1P21260_001	Banana	cytosol	82.02	82.02
KRH42301	Soybean	nucleus	81.27	81.27
VIT_02s0025g02010.t01	Wine grape	cytosol	80.9	80.9
KRH58430	Soybean	nucleus	81.65	79.56
TraesCS7A01G065500.1	Wheat	cytosol, golgi	79.4	79.4
TraesCS7D01G059900.1	Wheat	cytosol	79.03	79.03
TraesCS4B01G049700.1	Wheat	cytosol	79.03	79.03
TraesCS4A01G422100.1	Wheat	cytosol	79.03	79.03
TraesCS4D01G050100.1	Wheat	cytosol	76.03	78.99
Zm00001d039483_P001	Maize	cytosol	94.76	78.09
TraesCS6B01G357900.1	Wheat	cytosol	77.15	77.44
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	76.4	76.4
AT1G64520.1	Thale cress	nucleus	76.4	76.4
CDY69533	Canola	cytosol	76.03	76.03
CDY62022	Canola	extracellular	76.03	76.03
CDY47840	Canola	cytosol	76.03	76.03
Bra040915.1-P	Field mustard	cytosol	76.03	76.03
PGSC0003DMT400031956	Potato	cytosol	75.66	75.66
Bra027705.1-P	Field mustard	cytosol	75.66	75.66
Zm00001d040137_P001	Maize	cytosol	40.45	71.52
AT5G42040.1	Thale cress	cytosol	59.18	67.81
Zm00001d019655_P001	Maize	cytosol	14.23	57.58
HORVU2Hr1G099580.8	Barley	nucleus	58.05	45.59
TraesCS4D01G012200.1	Wheat	mitochondrion	15.73	42.42

Protein Annotations

Gene3D:1.25.40.990	EntrezGene:100282470	MapMan:19.2.6.2.2.11	InterPro:26S_Psome_Rpn12	ProteinID:AQK41026.1	UniProt:B4FR70
EMBL:BT039608	InterPro:CSN8_PSD8_EIF3K	EMBL:EU961020	GO:GO:0000502	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005838	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538
InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF10075	PFscan:PS50250	PANTHER:PTHR12387	UniParc:UPI00017B7D8D
EnsemblPlantsGene:Zm00001d024319	EnsemblPlants:Zm00001d024319_P001	EnsemblPlants:Zm00001d024319_T001	SEG:seg	:	:

Description

26S proteasome non-ATPase regulatory subunit 8 homolog A

Coordinates

chr10:+:64272530..64275570

Molecular Weight (calculated)

30783.0 Da

IEP (calculated)

4.810

GRAVY (calculated)

-0.301

Length

267 amino acids

Sequence
(BLAST)

001: MDPKMTEVTQ MFARFKAAYT RNDLDACVTL LSQLKVHLTK FPSLPPSFEQ TPKAVEELKL ARDIYEHAVV LSVKLEDQDA FERDFCQLKP YYMDTCGIIP
101: PSPEEYPILG LNLLRLLVQN RIAEFHTELE LLPVKALEHP CIKHAVELEQ SFMEGAYNRV LSARQAVPHE TYVYFMDLLA KTVRDEIAGC SEKGYDSLSV
201: SDAKQMLMFS SDQDLHEYIT EEHPEWELKN GAVFFQKAKE SQPYKEIPSL QLINQTLSYA RELERIV

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.