CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG21007
KXG38410

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	KXG21007	AT3G01410.1	21798944
AT1G64520.1	KXG38410	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024319_P001	Maize	cytosol, extracellular	97.38	97.38
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	87.64	87.64
GSMUA_Achr11P...	Banana	cytosol	83.15	83.15
KRH42301	Soybean	nucleus	82.02	82.02
GSMUA_Achr1P21260_001	Banana	cytosol	82.02	82.02
VIT_02s0025g02010.t01	Wine grape	cytosol	81.27	81.27
KRH58430	Soybean	nucleus	82.4	80.29
TraesCS7A01G065500.1	Wheat	cytosol, golgi	80.15	80.15
TraesCS4A01G422100.1	Wheat	cytosol	79.78	79.78
TraesCS4B01G049700.1	Wheat	cytosol	79.78	79.78
TraesCS7D01G059900.1	Wheat	cytosol	79.78	79.78
TraesCS4D01G050100.1	Wheat	cytosol	76.78	79.77
Zm00001d039483_P001	Maize	cytosol	95.88	79.01
TraesCS6B01G357900.1	Wheat	cytosol	77.9	78.2
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	77.15	77.15
PGSC0003DMT400031956	Potato	cytosol	76.78	76.78
AT1G64520.1	Thale cress	nucleus	76.4	76.4
CDY69533	Canola	cytosol	76.03	76.03
CDY62022	Canola	extracellular	76.03	76.03
CDY47840	Canola	cytosol	76.03	76.03
Bra040915.1-P	Field mustard	cytosol	76.03	76.03
Bra027705.1-P	Field mustard	cytosol	75.66	75.66
Zm00001d040137_P001	Maize	cytosol	40.45	71.52
AT5G42040.1	Thale cress	cytosol	59.18	67.81
Zm00001d019655_P001	Maize	cytosol	14.23	57.58
HORVU2Hr1G099580.8	Barley	nucleus	58.05	45.59
TraesCS4D01G012200.1	Wheat	mitochondrion	16.48	44.44

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.6.2.2.11	InterPro:26S_Psome_Rpn12	EntrezGene:8071182	UniProt:C5YIK8	InterPro:CSN8_PSD8_EIF3K
EnsemblPlants:EES13525	ProteinID:EES13525	ProteinID:EES13525.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005838	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0043161	GO:GO:0043248	InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF10075	PFscan:PS50250
PANTHER:PTHR12387	EnsemblPlantsGene:SORBI_3007G076300	unigene:Sbi.3600	UniParc:UPI0001A87483	RefSeq:XP_002444030.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:8845493..8848689

Molecular Weight (calculated)

30690.8 Da

IEP (calculated)

4.797

GRAVY (calculated)

-0.284

Length

267 amino acids

Sequence
(BLAST)

001: MDPKMTEVTQ MFARFKAAYA RNDLDACVTL LSQLKVHLTK FPSLPPSFQQ TPNAVEELKL ARDIYEHAVV LSVKLEDQDA FERDFCQLKP YYMDTCGIIP
101: PSPEEYPILG LNLLRLLVQN RIAEFHTELE LLPVKALEHP CIKHAVELEQ SFMEGAYNRV LSARQAVPHE TYVYFMDLLA KTVRDEIAGC SEKGYDSLSV
201: SDAKQMLMFN SDQDLHEYIS EEHPEWEIKN GAVFFQKAKE SQPCKEIPSL QLINQTLSYA RELERIV

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.