Factsheet for GSMUA_Achr11P13420_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P16430_001
GSMUA_Achr9P16450_001
GSMUA_Achr9P17780_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	GSMUA_Achr9P16430_001	AT3G01410.1	21798944
AT1G64520.1	GSMUA_Achr9P16450_001	AT3G01410.1	21798944
AT1G64520.1	GSMUA_Achr9P17780_001	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21260_001	Banana	cytosol	91.76	91.76
VIT_02s0025g02010.t01	Wine grape	cytosol	85.02	85.02
KRH42301	Soybean	nucleus	85.02	85.02
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	83.9	83.9
KRH58430	Soybean	nucleus	85.39	83.21
EES13525	Sorghum	cytosol	83.15	83.15
Zm00001d024319_P001	Maize	cytosol, extracellular	83.15	83.15
Bra040915.1-P	Field mustard	cytosol	79.78	79.78
CDY47840	Canola	cytosol	79.78	79.78
PGSC0003DMT400031956	Potato	cytosol	79.78	79.78
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	79.78	79.78
CDY62022	Canola	extracellular	79.4	79.4
CDY69533	Canola	cytosol	79.4	79.4
Bra027705.1-P	Field mustard	cytosol	79.03	79.03
AT1G64520.1	Thale cress	nucleus	78.65	78.65
TraesCS4D01G050100.1	Wheat	cytosol	74.91	77.82
TraesCS7A01G065500.1	Wheat	cytosol, golgi	77.53	77.53
TraesCS4A01G422100.1	Wheat	cytosol	77.15	77.15
TraesCS4B01G049700.1	Wheat	cytosol	77.15	77.15
TraesCS7D01G059900.1	Wheat	cytosol	77.15	77.15
TraesCS6B01G357900.1	Wheat	cytosol	74.16	74.44
AT5G42040.1	Thale cress	cytosol	59.55	68.24
Zm00001d039483_P001	Maize	cytosol	82.02	67.59
Zm00001d040137_P001	Maize	cytosol	33.71	59.6
Zm00001d019655_P001	Maize	cytosol	13.48	54.55
TraesCS4D01G012200.1	Wheat	mitochondrion	16.1	43.43
HORVU2Hr1G099580.8	Barley	nucleus	54.31	42.65

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.6.2.2.11	InterPro:26S_Psome_Rpn12	InterPro:CSN8_PSD8_EIF3K	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005838	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr11G13420_001	EnsemblPlants:GSMUA_Achr11P13420_001	EnsemblPlants:GSMUA_Achr11T13420_001	InterPro:IPR000717	UniProt:M0RRX2	InterPro:PCI_dom
PFAM:PF10075	PFscan:PS50250	PANTHER:PTHR12387	UniParc:UPI000294826C	SEG:seg	:

Description

26S proteasome non-ATPase regulatory subunit RPN12A [Source:GMGC_GENE;Acc:GSMUA_Achr11G13420_001]

Coordinates

chr11:+:14031020..14045639

Molecular Weight (calculated)

30730.7 Da

IEP (calculated)

4.594

GRAVY (calculated)

-0.234

Length

267 amino acids

Sequence
(BLAST)

001: MDPKLVEVTQ LFERFKAAFV RNDFGACTDL LSHLKVLLTK FPSLPPSYEE TPNAVQELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP FYTDTCGIIP
101: PSPQEYPILG LNLLRLLVQN RIAEFHTELE LLPQSALENP CIKHAVELEQ SFMEGAYNRV LSARQTVPHD TYVYFLDLLA KTVRDEIAGC SEKAYDYLSI
201: NNAKKILMFS TDQELSEYIT EEHPEWEIKN GCVFFQKAKE SQPCKEIPAL QLINQTLSYA RELERIV

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.