Factsheet for VIT_02s0025g02010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42301	Soybean	nucleus	89.14	89.14
KRH58430	Soybean	nucleus	89.89	87.59
GSMUA_Achr11P...	Banana	cytosol	85.02	85.02
GSMUA_Achr1P21260_001	Banana	cytosol	84.27	84.27
Bra040915.1-P	Field mustard	cytosol	83.9	83.9
CDY47840	Canola	cytosol	83.9	83.9
CDY62022	Canola	extracellular	83.9	83.9
CDY69533	Canola	cytosol	83.9	83.9
Bra027705.1-P	Field mustard	cytosol	83.52	83.52
PGSC0003DMT400031956	Potato	cytosol	82.77	82.77
AT1G64520.1	Thale cress	nucleus	82.4	82.4
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	82.02	82.02
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	82.02	82.02
EES13525	Sorghum	cytosol	81.27	81.27
Zm00001d024319_P001	Maize	cytosol, extracellular	80.9	80.9
TraesCS7A01G065500.1	Wheat	cytosol, golgi	77.53	77.53
TraesCS4D01G050100.1	Wheat	cytosol	74.53	77.43
TraesCS4B01G049700.1	Wheat	cytosol	77.15	77.15
TraesCS7D01G059900.1	Wheat	cytosol	77.15	77.15
TraesCS4A01G422100.1	Wheat	cytosol	76.78	76.78
TraesCS6B01G357900.1	Wheat	cytosol	73.78	74.06
AT5G42040.1	Thale cress	cytosol	63.3	72.53
Zm00001d039483_P001	Maize	cytosol	81.27	66.98
Zm00001d019655_P001	Maize	cytosol	14.61	59.09
Zm00001d040137_P001	Maize	cytosol	33.33	58.94
TraesCS4D01G012200.1	Wheat	mitochondrion	16.1	43.43
HORVU2Hr1G099580.8	Barley	nucleus	54.68	42.94

Protein Annotations

Gene3D:1.25.40.990	EntrezGene:100258086	wikigene:100258086	MapMan:19.2.6.2.2.11	InterPro:26S_Psome_Rpn12	ProteinID:CBI34534
ProteinID:CBI34534.3	InterPro:CSN8_PSD8_EIF3K	UniProt:D7TVK9	EMBL:FN596251	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005838	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0043161	GO:GO:0043248	InterPro:IPR000717	EntrezGene:LOC100258086	wikigene:LOC100258086
InterPro:PCI_dom	PFAM:PF10075	PFscan:PS50250	PANTHER:PTHR12387	TIGR:TC53188	UniParc:UPI00015CD1BF
ArrayExpress:VIT_02s0025g02010	EnsemblPlantsGene:VIT_02s0025g02010	EnsemblPlants:VIT_02s0025g02010.t01	RefSeq:XP_002264255	RefSeq:XP_002264255.1	SEG:seg

Description

No Description!

Coordinates

chr2:+:1821024..1826445

Molecular Weight (calculated)

30924.9 Da

IEP (calculated)

4.908

GRAVY (calculated)

-0.329

Length

267 amino acids

Sequence
(BLAST)

001: MDPKLREVSQ GLERFKAAFV RSDFDTCTKL LSQLKVLLTE FRSLPPLFED SPNAVHELKI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYTDTGGRLP
101: PSPQEYPILG LNLLRLLVQN RIAEFHTELE LLSATALENA CIKHAVELEQ SFMEGAYNRV LSARQTVPHE TYVYFMDLLA KTVRDEIAGC SEKAYDYLSI
201: NDARHMLLFS SDQELFEYIK EEHPEWEIKN GHVFFQRAKE SAPCKEIPSL QLINQTLSYA RELERIV

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.