Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G049700.1 | Wheat | cytosol | 95.49 | 95.13 |
| TraesCS3B01G441400.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 50.38 | 82.21 |
| Os07t0435100-01 | Rice | cytosol, plasma membrane, plastid | 78.95 | 78.65 |
| EES13525 | Sorghum | cytosol | 78.2 | 77.9 |
| Zm00001d024319_P001 | Maize | cytosol, extracellular | 77.44 | 77.15 |
| KRH42301 | Soybean | nucleus | 74.44 | 74.16 |
| GSMUA_Achr11P... | Banana | cytosol | 74.44 | 74.16 |
| GSMUA_Achr1P21260_001 | Banana | cytosol | 74.06 | 73.78 |
| VIT_02s0025g02010.t01 | Wine grape | cytosol | 74.06 | 73.78 |
| KRH58430 | Soybean | nucleus | 74.81 | 72.63 |
| CDY69533 | Canola | cytosol | 70.3 | 70.04 |
| CDY62022 | Canola | extracellular | 70.3 | 70.04 |
| CDY47840 | Canola | cytosol | 70.3 | 70.04 |
| PGSC0003DMT400031956 | Potato | cytosol | 70.3 | 70.04 |
| Bra040915.1-P | Field mustard | cytosol | 70.3 | 70.04 |
| Bra027705.1-P | Field mustard | cytosol | 70.3 | 70.04 |
| Solyc08g082700.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 69.92 | 69.66 |
| AT1G64520.1 | Thale cress | nucleus | 69.55 | 69.29 |
| Zm00001d039483_P001 | Maize | cytosol | 77.44 | 63.58 |
| AT5G42040.1 | Thale cress | cytosol | 53.76 | 61.37 |
| TraesCS2B01G446400.1 | Wheat | cytosol | 58.27 | 58.27 |
| Zm00001d040137_P001 | Maize | cytosol | 30.08 | 52.98 |
| Zm00001d019655_P001 | Maize | cytosol | 12.41 | 50.0 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G357900.1 | EnsemblPlantsGene:TraesCS6B01G357900 | Gene3D:1.25.40.990 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005838 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0019538 | InterPro:26S_Psome_Rpn12 |
| InterPro:CSN8_PSD8_EIF3K | InterPro:IPR000717 | InterPro:PCI_dom | PANTHER:PTHR12387 | PFAM:PF10075 | PFscan:PS50250 |
| MapMan:19.2.6.2.2.11 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:626212094..626216999
Molecular Weight (calculated)
30517.6 Da
IEP (calculated)
4.799
GRAVY (calculated)
-0.358
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKLVEVTR LFDRKAASKA NNLDVASTLL SQLKVLLTKF PSLPPLFQQT PNAVEELKLA REIYEQAVIL SVKMEDQDAF ERDFCQLKPY YMDTCGTIPP
101: SSEEYPIMGA NLLRLLVQNR IAEFHTELEL LPAKALDNAY IKHGVELEQS FMEGAYNRVL SARQTAPHET YIYFMDLLVR RQIDEIAGCS EKGYDYLSIN
201: DAKQMFKFSS DKELQQYIAE EHPEWDVKDG RVLFQKAKES QPCKEIPAAP VINQTLGYAR ELERIV
101: SSEEYPIMGA NLLRLLVQNR IAEFHTELEL LPAKALDNAY IKHGVELEQS FMEGAYNRVL SARQTAPHET YIYFMDLLVR RQIDEIAGCS EKGYDYLSIN
201: DAKQMFKFSS DKELQQYIAE EHPEWDVKDG RVLFQKAKES QPCKEIPAAP VINQTLGYAR ELERIV
001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV
Arabidopsis Description
RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.