Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, golgi, plasma membrane, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G049700.1 | Wheat | cytosol | 84.66 | 51.69 |
| TraesCS6B01G357900.1 | Wheat | cytosol | 82.21 | 50.38 |
| TraesCS2B01G446400.1 | Wheat | cytosol | 61.96 | 37.97 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G441400.1 | EnsemblPlantsGene:TraesCS3B01G441400 | Gene3D:1.25.40.990 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005838 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0019538 | InterPro:26S_Psome_Rpn12 |
| InterPro:CSN8_PSD8_EIF3K | PANTHER:PTHR12387 | PFAM:PF10075 | MapMan:19.2.6.2.2.11 | : | : |
Description
No Description!
Coordinates
chr3B:+:680748907..680751074
Molecular Weight (calculated)
18622.7 Da
IEP (calculated)
5.014
GRAVY (calculated)
-0.056
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKLVEVMQ LFARFKAAYL RSDLDVCSNF LSQLKALLTK FPSLPPLFQQ TPNAVEELKL ARDIYEHAVL LSVKTEDQDA FERDFCHLKP YYMDTCGIIP
101: PSPVEYPIMG LNLLRLLVQN RIAEFHTELE PLPTKALENP CIKHAVELEQ SLMEGAYNRV LSA
101: PSPVEYPIMG LNLLRLLVQN RIAEFHTELE PLPTKALENP CIKHAVELEQ SLMEGAYNRV LSA
001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV
Arabidopsis Description
RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.