Factsheet for Zm00001d040137_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d032798_P001
Zm00001d035750_P001
Zm00001d049892_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	Zm00001d032798_P001	AT3G01410.1	21798944
AT1G64520.1	Zm00001d035750_P001	AT3G01410.1	21798944
AT1G64520.1	Zm00001d049892_P001	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019655_P001	Maize	cytosol	21.85	50.0
Zm00001d024319_P001	Maize	cytosol, extracellular	71.52	40.45
EES13525	Sorghum	cytosol	71.52	40.45
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	62.25	35.21
KRH42301	Soybean	nucleus	60.26	34.08
AT5G42040.1	Thale cress	cytosol	52.32	33.91
GSMUA_Achr11P...	Banana	cytosol	59.6	33.71
GSMUA_Achr1P21260_001	Banana	cytosol	59.6	33.71
VIT_02s0025g02010.t01	Wine grape	cytosol	58.94	33.33
KRH58430	Soybean	nucleus	60.26	33.21
TraesCS4D01G050100.1	Wheat	cytosol	55.63	32.68
Zm00001d039483_P001	Maize	cytosol	69.54	32.41
TraesCS4A01G422100.1	Wheat	cytosol	56.29	31.84
TraesCS7D01G059900.1	Wheat	cytosol	56.29	31.84
TraesCS7A01G065500.1	Wheat	cytosol, golgi	56.29	31.84
TraesCS4B01G049700.1	Wheat	cytosol	56.29	31.84
CDY69533	Canola	cytosol	55.63	31.46
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	55.63	31.46
PGSC0003DMT400031956	Potato	cytosol	55.63	31.46
Bra040915.1-P	Field mustard	cytosol	55.63	31.46
CDY47840	Canola	cytosol	55.63	31.46
CDY62022	Canola	extracellular	55.63	31.46
Bra027705.1-P	Field mustard	cytosol	54.97	31.09
AT1G64520.1	Thale cress	nucleus	54.97	31.09
TraesCS6B01G357900.1	Wheat	cytosol	52.98	30.08
HORVU2Hr1G099580.8	Barley	nucleus	54.3	24.12
TraesCS4D01G012200.1	Wheat	mitochondrion	1.99	3.03

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.6.2.2.11	InterPro:26S_Psome_Rpn12	UniProt:A0A1D6MNC2	InterPro:CSN8_PSD8_EIF3K	GO:GO:0000502
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005838	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	InterPro:IPR000717	ProteinID:ONM30620.1	InterPro:PCI_dom	PFAM:PF10075
PFscan:PS50250	PANTHER:PTHR12387	UniParc:UPI000842D204	EnsemblPlantsGene:Zm00001d040137	EnsemblPlants:Zm00001d040137_P001	EnsemblPlants:Zm00001d040137_T001
SEG:seg	:	:	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 8 homolog A

Coordinates

chr3:+:28977570..28978298

Molecular Weight (calculated)

17509.3 Da

IEP (calculated)

5.518

GRAVY (calculated)

-0.063

Length

151 amino acids

Sequence
(BLAST)

001: MPSGYFLGTR QDCIMLNIVN LIPSDIYLCS GIVPPSPEEY PILRLSLLRL LIHNRIAEFH TELELLPVKA LEHPCSKHAV ELKHSFMEGV YNRVLRVWQA
101: VPHETYVYVM DLIAKTARDE IARYSEKGYD SLYVSDEKQM LMFISDQDLH D

Best Arabidopsis Sequence Match ( AT5G42040.1 )
(BLAST)

001: MDPQLMEVSQ QFERFKAAFI IKDFDTCSSL LSQLKLFDHY LISLSLNALL LLTCALFFLC TRNRIPPSPQ ENLIMGLNLL RLLVQNRIAE FHTELGLLSS
101: ATLENPCIKH AVELEQSFME GAYNRVLSAR QTAPDETYVY FMDLLAKTIR DEIAGCSEKA YDHLSISEGC KMLLFSSDQQ LLTYVNEEHP EWEVKDGLVV
201: FQKTRETAPC KEIPSLQLIN QTLSYTRELE RIL

Arabidopsis Description

RPN12BPutative 26S proteasome non-ATPase regulatory subunit 8 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.