Factsheet for HORVU2Hr1G099580.8

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G067140.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	HORVU5Hr1G067140.3	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G446400.1	Wheat	cytosol	59.71	76.32
TraesCS2D01G424200.1	Wheat	cytosol	59.12	75.56
TraesCS2A01G426100.1	Wheat	cytosol	49.41	71.19
Zm00001d024319_P001	Maize	cytosol, extracellular	45.59	58.05
EES13525	Sorghum	cytosol	45.59	58.05
VIT_02s0025g02010.t01	Wine grape	cytosol	42.94	54.68
GSMUA_Achr11P...	Banana	cytosol	42.65	54.31
Zm00001d040137_P001	Maize	cytosol	24.12	54.3
GSMUA_Achr1P21260_001	Banana	cytosol	42.06	53.56
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	41.76	53.18
KRH42301	Soybean	nucleus	40.88	52.06
KRH58430	Soybean	nucleus	41.18	51.09
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	40.0	50.94
CDY69533	Canola	cytosol	40.0	50.94
CDY62022	Canola	extracellular	40.0	50.94
CDY47840	Canola	cytosol	40.0	50.94
Bra040915.1-P	Field mustard	cytosol	40.0	50.94
PGSC0003DMT400031956	Potato	cytosol	39.71	50.56
Bra027705.1-P	Field mustard	cytosol	39.71	50.56
AT1G64520.1	Thale cress	nucleus	38.82	49.44
Zm00001d039483_P001	Maize	cytosol	44.12	46.3
AT5G42040.1	Thale cress	cytosol	29.41	42.92
Zm00001d019655_P001	Maize	cytosol	8.24	42.42

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.6.2.2.11	InterPro:26S_Psome_Rpn12	UniProt:A0A287J5L6	InterPro:CSN8_PSD8_EIF3K	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005838	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	EnsemblPlantsGene:HORVU2Hr1G099580	EnsemblPlants:HORVU2Hr1G099580.8	InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF10075
PFscan:PS50250	PANTHER:PTHR12387	UniParc:UPI000B4835A0	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:-:687999830..688003032

Molecular Weight (calculated)

39462.7 Da

IEP (calculated)

9.284

GRAVY (calculated)

-0.501

Length

340 amino acids

Sequence
(BLAST)

001: CRRKRYSIRI PIFPIHLGHD HDRQFPTLRL TRPPGNGTGG TISSCKKSPQ KLERKKVSEE NYRDQRRRGR GEQGRAKLLL PPMDRKLEEA SSKLAWLKLA
101: CADDERACTV GELASCAALL TELKVLLTKF PSMPPSFERT PNAVAELKLA RSIYEFAVIF SIKVKDQDAF ERNFFQLKVF YMDTRGILPP SPEEYRNLGL
201: NLMRLLAENR VAEFHTELEL LPPRALDHPC IKYVVELEQS FMEGTYNRVI NGQQAVPHET YLYFKDLLAE TIRDEIADCS GQAYDHLPVN DVRDMLMFSS
301: EQQLLEYISE RLNMNGRFRI IQFFSTWRRS NPVSAYKRIR

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.