Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040915.1-P | Field mustard | cytosol | 95.88 | 95.88 |
| CDY47840 | Canola | cytosol | 95.88 | 95.88 |
| CDY69533 | Canola | cytosol | 95.51 | 95.51 |
| Bra027705.1-P | Field mustard | cytosol | 95.13 | 95.13 |
| CDY62022 | Canola | extracellular | 95.13 | 95.13 |
| KRH42301 | Soybean | nucleus | 83.52 | 83.52 |
| VIT_02s0025g02010.t01 | Wine grape | cytosol | 82.4 | 82.4 |
| KRH58430 | Soybean | nucleus | 84.27 | 82.12 |
| PGSC0003DMT400031956 | Potato | cytosol | 81.65 | 81.65 |
| Solyc08g082700.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 80.9 | 80.9 |
| AT5G42040.1 | Thale cress | cytosol | 69.66 | 79.83 |
| GSMUA_Achr11P... | Banana | cytosol | 78.65 | 78.65 |
| Os07t0435100-01 | Rice | cytosol, plasma membrane, plastid | 78.28 | 78.28 |
| GSMUA_Achr1P21260_001 | Banana | cytosol | 77.53 | 77.53 |
| Zm00001d024319_P001 | Maize | cytosol, extracellular | 76.4 | 76.4 |
| EES13525 | Sorghum | cytosol | 76.4 | 76.4 |
| TraesCS7A01G065500.1 | Wheat | cytosol, golgi | 71.91 | 71.91 |
| TraesCS4B01G049700.1 | Wheat | cytosol | 71.54 | 71.54 |
| TraesCS4D01G050100.1 | Wheat | cytosol | 68.54 | 71.21 |
| TraesCS7D01G059900.1 | Wheat | cytosol | 71.16 | 71.16 |
| TraesCS4A01G422100.1 | Wheat | cytosol | 71.16 | 71.16 |
| TraesCS6B01G357900.1 | Wheat | cytosol | 69.29 | 69.55 |
| Zm00001d039483_P001 | Maize | cytosol | 77.15 | 63.58 |
| Zm00001d040137_P001 | Maize | cytosol | 31.09 | 54.97 |
| Zm00001d019655_P001 | Maize | cytosol | 13.48 | 54.55 |
| TraesCS4D01G012200.1 | Wheat | mitochondrion | 15.73 | 42.42 |
| HORVU2Hr1G099580.8 | Barley | nucleus | 49.44 | 38.82 |
Protein Annotations
| Gene3D:1.25.40.990 | MapMan:19.2.6.2.2.11 | InterPro:26S_Psome_Rpn12 | EntrezGene:842760 | UniProt:A0A178WH62 | ProteinID:AAF19671.1 |
| ProteinID:AEE34249.1 | EMBL:AF410265 | ArrayExpress:AT1G64520 | EnsemblPlantsGene:AT1G64520 | RefSeq:AT1G64520 | TAIR:AT1G64520 |
| RefSeq:AT1G64520-TAIR-G | EnsemblPlants:AT1G64520.1 | TAIR:AT1G64520.1 | EMBL:AY039857 | EMBL:AY143888 | EMBL:AY230846 |
| EMBL:AY230847 | InterPro:CSN8_PSD8_EIF3K | GO:GO:0000003 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005838 | GO:GO:0006508 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008541 | GO:GO:0009056 | GO:GO:0009058 |
| GO:GO:0009408 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009647 | GO:GO:0009719 | GO:GO:0009733 |
| GO:GO:0009735 | GO:GO:0009736 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009941 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0031540 | GO:GO:0043161 |
| GO:GO:0043248 | GO:GO:0048366 | GO:GO:0048528 | GO:GO:0048825 | GO:GO:0051788 | InterPro:IPR000717 |
| RefSeq:NP_176633.1 | ProteinID:OAP16813.1 | InterPro:PCI_dom | PFAM:PF10075 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001050 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50250 | PANTHER:PTHR12387 | UniProt:Q9SGW3 | Symbol:RPN12a | UniParc:UPI00000AC5DD |
| SEG:seg | : | : | : | : | : |
Description
RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
Coordinates
chr1:+:23956269..23958461
Molecular Weight (calculated)
30707.5 Da
IEP (calculated)
4.538
GRAVY (calculated)
-0.289
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.