Factsheet for TraesCS2D01G503000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid

Predictor Summary:

peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, unclear
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G502400.1
TraesCS2B01G530500.1
TraesCS2D01G503000.1
TraesCS5A01G186800.1
TraesCS5B01G185200.2
TraesCS5D01G192100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18960.1	TraesCS2A01G502400.1	AT2G18960.1	12182706
AT2G18960.1	TraesCS2B01G530500.1	AT2G18960.1	12182706
AT2G18960.1	TraesCS2D01G503000.1	AT2G18960.1	12182706
AT2G18960.1	TraesCS5A01G186800.1	AT4G27500.1	12182706
AT2G18960.1	TraesCS5B01G185200.2	AT4G27500.1	12182706
AT2G18960.1	TraesCS5D01G192100.1	AT4G27500.1	12182706
AT2G18960.1	TraesCS5A01G186800.1	AT4G27500.1	16279950
AT2G18960.1	TraesCS5B01G185200.2	AT4G27500.1	16279950
AT2G18960.1	TraesCS5D01G192100.1	AT4G27500.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G530500.1	Wheat	peroxisome	100.0	100.0
TraesCS2A01G502400.1	Wheat	golgi	99.16	99.16
Os04t0656100-01	Rice	plasma membrane	93.06	93.06
HORVU2Hr1G111640.2	Barley	plasma membrane	98.74	92.97
EES11577	Sorghum	cytosol, peroxisome, plasma membrane	92.11	92.11
Zm00001d026490_P010	Maize	peroxisome	91.69	88.8
PGSC0003DMT400010497	Potato	cytosol, peroxisome, plasma membrane	87.7	87.61
Bra010298.1-P	Field mustard	cytosol, peroxisome, plasma membrane	84.75	85.11
Bra010299.1-P	Field mustard	plasma membrane	83.91	84.98
CDY14186	Canola	plasma membrane	83.91	84.98
CDY51650	Canola	plasma membrane	80.97	84.62
CDY51651	Canola	plasma membrane	79.92	84.54
Bra024101.1-P	Field mustard	plasma membrane	80.44	84.53
CDX72218	Canola	peroxisome	80.76	84.3
CDX82608	Canola	peroxisome	84.02	84.19
Bra024100.1-P	Field mustard	cytosol, peroxisome, plasma membrane	83.91	84.18
CDY28167	Canola	peroxisome	83.91	84.18
Bra011172.1-P	Field mustard	peroxisome	83.91	84.18
CDX72217	Canola	peroxisome	80.55	84.18
CDY03545	Canola	plastid	58.36	84.09
AT2G18960.1	Thale cress	peroxisome	83.91	84.09
CDY67153	Canola	peroxisome	81.07	83.99
CDY30294	Canola	peroxisome	83.81	83.98
Bra038835.1-P	Field mustard	cytosol, peroxisome, plasma membrane	83.7	83.88
CDY64741	Canola	peroxisome	83.7	83.88
AT5G57350.1	Thale cress	peroxisome	83.07	83.25
AT4G30190.2	Thale cress	peroxisome	85.07	82.47
CDY25913	Canola	peroxisome	82.54	82.46
CDY47940	Canola	peroxisome	82.44	82.44
CDY42259	Canola	peroxisome	82.44	82.44
Bra002733.1-P	Field mustard	cytosol, peroxisome, plasma membrane	82.44	82.35
CDY38294	Canola	peroxisome	82.23	82.14
Bra020447.1-P	Field mustard	plasma membrane	58.78	81.37
Bra024452.1-P	Field mustard	cytosol, peroxisome, plasma membrane	80.13	80.3
TraesCS1D01G257600.1	Wheat	peroxisome	80.44	79.94
TraesCS4D01G027900.1	Wheat	peroxisome	80.34	79.83
TraesCS7D01G500200.1	Wheat	peroxisome	79.5	79.66
TraesCS6D01G344000.1	Wheat	peroxisome	79.07	79.16
TraesCS5D01G013100.2	Wheat	golgi	79.6	79.02
TraesCS7D01G146700.1	Wheat	peroxisome	78.44	78.86
CDY62140	Canola	peroxisome	56.47	78.28
Zm00001d002006_P013	Maize	peroxisome	62.15	77.36
VIT_19s0090g00010.t01	Wine grape	mitochondrion	5.68	77.14
KRH16408	Soybean	cytosol, extracellular, plasma membrane	15.25	77.13
CDY56511	Canola	peroxisome	72.45	76.81
CDY45897	Canola	extracellular	7.15	73.91
TraesCS4D01G298900.3	Wheat	nucleus, peroxisome, plasma membrane	68.56	66.6
CDY62141	Canola	cytosol, endoplasmic reticulum, plasma membrane	15.88	66.52
CDY14177	Canola	extracellular	17.25	65.08
AT4G11730.1	Thale cress	peroxisome	53.73	62.85
GSMUA_Achr7P19560_001	Banana	nucleus	15.77	60.0
VIT_02s0012g00950.t01	Wine grape	plastid	14.09	57.02
Solyc02g011700.1.1	Tomato	extracellular	5.78	49.55
CDY28277	Canola	cytosol	4.84	42.59
VIT_01s0011g01030.t01	Wine grape	peroxisome, plasma membrane, plastid	22.61	37.99
CDY33128	Canola	plastid	7.05	30.32
CDY13569	Canola	cytosol	2.63	29.07

Protein Annotations

KEGG:00190+3.6.3.6	Gene3D:1.20.1110.10	MapMan:24.1.2.3.1	Gene3D:3.40.1110.10	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf
InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0008553	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0120029	InterPro:HAD-like_sf
InterPro:IPR023299	InterPro:P-type_ATPase_IIIA	PFAM:PF00122	PFAM:PF00690	PFAM:PF00702	PRINTS:PR00119
PRINTS:PR00120	ScanProsite:PS00154	PANTHER:PTHR42861	PANTHER:PTHR42861:SF41	InterPro:P_typ_ATPase	SMART:SM00831
SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01647	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS2D01G503000	EnsemblPlants:TraesCS2D01G503000.1	TIGR:cd02076	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:-:596911685..596917454

Molecular Weight (calculated)

104740.0 Da

IEP (calculated)

6.801

GRAVY (calculated)

0.103

Length

951 amino acids

Sequence
(BLAST)

001: MGGLEEIRNE AVDLENIPIE EVFEQLKCTR QGLTSDEGAQ RVEIFGLNKL EEKKESKVLK FLGFMWNPLS WVMEMAAIMA IALANGGGKP PDWQDFVGII
101: VLLVINSTIS FIEENNAGNA AAALMANLAP KTKVLRDGRW GEQEASILVP GDIVSIKLGD IVPADARLLE GDPLKIDQSG LTGESLPVTK NPGDEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQQVL TAIGNFCIVS IAVGIVIEII VMFPIQRRKY RAGIENLLVL LIGGIPIAMP TVLSVTMAIG
301: SHKLSQQGAI TKRMTAIEEL AGMDVLCSDK TGTLTLNKLS VDKNLVEVFA KGVDKEHVLL LAARASRVEN QDAIDACMVG MLADPKEARA GIREVHFLPF
401: NPTDKRTALT YIDAEGNWHR ASKGAPEQII TLCNCKEDVK RKVHSVIEKY AERGLRSLAV ARQEVPEKSK DSPGGPWQFI GLLPLFDPPR HDSAETIRKA
501: LVLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSSALLGQ SKDGSLESLP VDELIEKADG FAGVFPEHKY EIVKRLQEKK HIVGMTGDGV NDAPALKKAD
601: IGIAVDDATD AARSASDIVL TEPGLSVIIS AVLTSRCIFQ RMKNYTIYAV SITIRIVLGF MLIALIWKFD FAPFMVLIIA ILNDGTIMTI SKDRVKPSPL
701: PDSWKLNEIF ATGVVLGTYL ALMTVVFFWV IHKTDFFTNK FGVRSIRDSE FEMMSALYLQ VSIVSQALIF VTRSRSWSFV ERPGFLLVTA FLLAQLVATL
801: IAVYANWEFA RIKGIGWGWA GVIWLFSIVF YFPLDIFKFF IRFVLSGRAW DNLLQNKTAF TTKENYGKGE REAQWATAQR TLHGLQAPEP ASHTLFNDKS
901: SYRELSEIAE QAKRRAEIAR LRELNTLKGH VESVVKLKGL DIDTINQNYT V

Best Arabidopsis Sequence Match ( AT4G30190.1 )
(BLAST)

001: MSSLEDIKNE TVDLEKIPIE EVFQQLKCSR EGLTTQEGED RIQIFGPNKL EEKKESKLLK FLGFMWNPLS WVMEMAAIMA IALANGDGRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TAIGNFCICS IAIGMVIEII VMYPIQRRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRVEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDGSGNWHR VSKGAPEQIL ELAKASNDLS KKVLSIIDKY AERGLRSLAV ARQVVPEKTK ESPGAPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSSALLGT HKDANLASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLKEIF ATGVVLGGYQ AIMTVIFFWA AHKTDFFSDT FGVRSIRDNN HELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FLIAQLIATL
801: IAVYANWEFA KIRGIGWGWA GVIWLYSIVT YFPLDVFKFA IRYILSGKAW LNLFENKTAF TMKKDYGKEE REAQWALAQR TLHGLQPKEA VNIFPEKGSY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVVKLKGLDI ETPSHYTV

Arabidopsis Description

HA2Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:F4JPJ7]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.