Factsheet for TraesCS5A01G186800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G502400.1
TraesCS2B01G530500.1
TraesCS2D01G503000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	TraesCS2A01G502400.1	AT2G18960.1	12182706
AT4G27500.1	TraesCS2B01G530500.1	AT2G18960.1	12182706
AT4G27500.1	TraesCS2D01G503000.1	AT2G18960.1	12182706
AT4G27500.1	TraesCS2A01G502400.1	AT2G18960.1	16279950
AT4G27500.1	TraesCS2B01G530500.1	AT2G18960.1	16279950
AT4G27500.1	TraesCS2D01G503000.1	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G185200.2	Wheat	nucleus	96.77	95.24
TraesCS5D01G192100.1	Wheat	nucleus	95.97	93.26
HORVU5Hr1G041880.1	Barley	nucleus	90.81	90.51
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	46.61	84.75
HORVU4Hr1G058930.1	Barley	nucleus	75.32	84.45
HORVU0Hr1G030120.1	Barley	nucleus, plastid	90.81	83.66
EER96610	Sorghum	nucleus	70.0	70.34
Zm00001d005636_P001	Maize	nucleus	67.58	67.91
Zm00001d020175_P002	Maize	golgi, plasma membrane	70.0	67.39
Os09t0346400-01	Rice	golgi, plasma membrane	67.58	66.83
EER96609	Sorghum	cytosol	30.16	58.62
GSMUA_Achr6P21610_001	Banana	cytosol	31.29	45.43
CDY29843	Canola	nucleus	40.97	42.33
Bra019045.1-P	Field mustard	nucleus	41.13	42.15
KRH27251	Soybean	endoplasmic reticulum, nucleus	40.65	41.72
CDY56314	Canola	nucleus	31.29	41.72
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	37.9	41.52
AT4G27500.1	Thale cress	nucleus	40.81	41.34
KRH22077	Soybean	endoplasmic reticulum	40.81	41.07
CDX89242	Canola	cytoskeleton, cytosol, nucleus	28.39	41.03
CDX97389	Canola	nucleus	40.0	40.26
PGSC0003DMT400032400	Potato	nucleus	39.19	38.63
CDY14276	Canola	nucleus	38.55	38.42
Solyc07g063100.2.1	Tomato	nucleus	38.71	38.22
KRH55252	Soybean	nucleus	40.32	37.59
Bra026343.1-P	Field mustard	nucleus	38.39	37.54
Solyc12g013860.1.1	Tomato	unclear	19.35	36.14
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	34.84	35.47
CDY56315	Canola	nucleus	5.97	34.91
Bra010401.1-P	Field mustard	nucleus	38.55	31.99
CDY26009	Canola	nucleus	20.32	31.5
CDY24116	Canola	nucleus	20.16	31.41
Bra019016.1-P	Field mustard	nucleus	19.84	30.98
Bra001590.1-P	Field mustard	nucleus	28.39	29.73
AT1G53110.1	Thale cress	nucleus	20.65	29.16
AT3G15340.3	Thale cress	nucleus	27.58	29.03
AT5G36780.1	Thale cress	nucleus	25.32	27.26
AT5G36690.1	Thale cress	nucleus	25.32	27.26
CDX82440	Canola	nucleus	26.45	26.58
Bra027261.1-P	Field mustard	nucleus	24.19	26.5
CDX75821	Canola	nucleus	25.97	26.39
CDX98546	Canola	nucleus	24.03	26.37
CDX97649	Canola	nucleus	23.39	26.22
TraesCS5A01G269500.1	Wheat	golgi	22.9	9.9

Protein Annotations

EnsemblPlants:TraesCS5A01G186800.1	EnsemblPlantsGene:TraesCS5A01G186800	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155	GO:GO:0016020
InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	SEG:seg	TMHMM:TMhelix
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:388570715..388576119

Molecular Weight (calculated)

70058.0 Da

IEP (calculated)

9.638

GRAVY (calculated)

-0.943

Length

620 amino acids

Sequence
(BLAST)

001: MGMEVAGAEA APAQVKVADE EVTLFQDKES QATAKEREEA AVFGSDNGKA AANDMAPPKD AAEEWPEPKQ TYTFYFVKIR SFEDPKLRAK LEQAEKDFQN
101: KIQARAKIID AIKAKKTERA AVLAELRPLS AENRQYNEAF NEKLEEMKPY RNRLGKFRDE NNAMRAESAG LCSSLEELEH EIKRLNHRIS HESISLDEEK
201: RLIKEIKTLE KTRPKVSSNA AKRAKMQDTV VERDAIQDQV KIIGDGIDGV KKERQAVRSK IKVLDDEMRV VDGEIALLQE DLNAATARKD KAYESLTELR
301: KARDLANASF HQNRIVLNRA RDHSSRNEVE ELQELHKTEV EKFMTQWCSS KTFREDYEKR ILTSLNGRQL TRDGRMRNPD EKPIFIETQQ PAAPVQQEPI
401: PSKAPLKQAK EAAAPQVVAP KEEPLAKASA KSAKVKAAVD ADDDAYEAEP PKEKPKPKEV DVAKLKEIKR QEEIEKNRLA LERKKKQAEK QAAKAAARAQ
501: KEAEKKLKKE EKKTKKKTEA DTDEPTDSDT KSDEAAETQA EDEFTPVSVV NKEQKQNTRT RNVVTKTKAP LPKAILKRKK AQSYRSWATP AVMISAVTVL
601: VALLAALGYY QYYRPASTSN

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.