Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97649 | Canola | nucleus | 82.65 | 84.45 |
| AT3G15340.3 | Thale cress | nucleus | 60.71 | 58.23 |
| CDX82440 | Canola | nucleus | 62.48 | 57.21 |
| CDX75821 | Canola | nucleus | 59.29 | 54.92 |
| AT5G36690.1 | Thale cress | nucleus | 52.04 | 51.04 |
| AT5G36780.1 | Thale cress | nucleus | 52.04 | 51.04 |
| CDY26009 | Canola | nucleus | 30.62 | 43.25 |
| CDY24116 | Canola | nucleus | 30.09 | 42.71 |
| KRH22077 | Soybean | endoplasmic reticulum | 34.34 | 31.49 |
| KRH27251 | Soybean | endoplasmic reticulum, nucleus | 33.1 | 30.96 |
| CDY29843 | Canola | nucleus | 32.04 | 30.17 |
| Solyc07g063100.2.1 | Tomato | nucleus | 33.45 | 30.1 |
| VIT_19s0014g02640.t01 | Wine grape | extracellular, nucleus | 29.91 | 29.86 |
| PGSC0003DMT400032400 | Potato | nucleus | 32.92 | 29.57 |
| CDX89242 | Canola | cytoskeleton, cytosol, nucleus | 22.12 | 29.14 |
| CDY14276 | Canola | nucleus | 31.5 | 28.62 |
| CDX97389 | Canola | nucleus | 30.97 | 28.41 |
| CDY56314 | Canola | nucleus | 23.01 | 27.96 |
| KRH55252 | Soybean | nucleus | 31.5 | 26.77 |
| CDY19058 | Canola | endoplasmic reticulum, nucleus, plastid | 28.32 | 26.27 |
| EER96610 | Sorghum | nucleus | 28.14 | 25.77 |
| Zm00001d005636_P001 | Maize | nucleus | 27.79 | 25.45 |
| GSMUA_Achr6P21610_001 | Banana | cytosol | 19.11 | 25.29 |
| Zm00001d020175_P002 | Maize | golgi, plasma membrane | 28.32 | 24.84 |
| Os08t0390000-02 | Rice | nucleus | 27.26 | 24.8 |
| EER96609 | Sorghum | cytosol | 13.98 | 24.76 |
| HORVU5Hr1G041880.1 | Barley | nucleus | 26.55 | 24.12 |
| TraesCS5A01G186800.1 | Wheat | nucleus | 26.37 | 24.03 |
| TraesCS5B01G185200.2 | Wheat | nucleus | 26.19 | 23.49 |
| Os09t0346400-01 | Rice | golgi, plasma membrane | 26.02 | 23.45 |
| TraesCS5D01G192100.1 | Wheat | nucleus | 26.37 | 23.35 |
| HORVU4Hr1G058930.1 | Barley | nucleus | 22.65 | 23.15 |
| CDY56315 | Canola | nucleus | 4.25 | 22.64 |
| HORVU0Hr1G030120.1 | Barley | nucleus, plastid | 26.55 | 22.29 |
| Solyc12g013860.1.1 | Tomato | unclear | 12.74 | 21.69 |
| HORVU2Hr1G081330.1 | Barley | cytosol, nucleus | 12.74 | 21.11 |
| CDY04588 | Canola | nucleus | 19.82 | 8.19 |
| CDY29491 | Canola | nucleus | 19.82 | 8.12 |
Protein Annotations
| EnsemblPlants:CDX98546 | EnsemblPlantsGene:GSBRNA2T00106196001 | GO:A0A078EBL8 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010155 |
| GO:GO:0016020 | InterPro:PPI | ncoils:Coil | PANTHER:PTHR32219 | PANTHER:PTHR32219:SF2 | ProteinID:CDX98546 |
| ProteinID:CDX98546.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE09F8 | MapMan:35.1 | : |
Description
BnaC05g38290D
Coordinates
chrLK031905:-:895017..898067
Molecular Weight (calculated)
64601.2 Da
IEP (calculated)
9.628
GRAVY (calculated)
-0.707
Length
565 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAQIIYCDG FEVVPPPPEM NDLILFGSDQ SGGGGSNCGE STVTTEEEGT VFSGDSSPGW RETKLFSFYF VKQPAYDDPD IKSKISKADS EIYHWNKRRI
101: DVYSAQKYQR AELSSLYAQM ESLVARSQGR KVVLEDKKME FDSLQEGLRC SSSDELDHLI FTAHYVVEHG SVKEEDWMLQ ETEKPGGMTL SDDSLAQKEA
201: SIHSLKLMAV EMNELKKELE AIAWNNQQLS DKIGQIQNKV MVLDAEMSYI LEQRDKSYEK IKMLRIQRDK GNAAFYHSIA VMKRAKELAA SGNVRDLEVY
301: SSSEVDRFMA RWNNDKAYRE DYVKRISHSL CERQLSRDGR IRDPESEAQA VREKLVKTRK EGMAVHKMNR EDSSSNSSQD GNVITEKQKK EVRKKAMDFN
401: RSSAEEKTLK EKKREEQLEK AQLAMERKRK LQEKATAKAA IRAQKEAEKK LKASYLLMLF VSLSLSYSLE CEKKAKKKAA SNSSLLKSQE AINELEKVST
501: IAVSGKEKQR SMFPKRSFRY KHRARGTEAL PKAILNRRKA QRYWVWGLSS AALALVLFLV FLLLR
101: DVYSAQKYQR AELSSLYAQM ESLVARSQGR KVVLEDKKME FDSLQEGLRC SSSDELDHLI FTAHYVVEHG SVKEEDWMLQ ETEKPGGMTL SDDSLAQKEA
201: SIHSLKLMAV EMNELKKELE AIAWNNQQLS DKIGQIQNKV MVLDAEMSYI LEQRDKSYEK IKMLRIQRDK GNAAFYHSIA VMKRAKELAA SGNVRDLEVY
301: SSSEVDRFMA RWNNDKAYRE DYVKRISHSL CERQLSRDGR IRDPESEAQA VREKLVKTRK EGMAVHKMNR EDSSSNSSQD GNVITEKQKK EVRKKAMDFN
401: RSSAEEKTLK EKKREEQLEK AQLAMERKRK LQEKATAKAA IRAQKEAEKK LKASYLLMLF VSLSLSYSLE CEKKAKKKAA SNSSLLKSQE AINELEKVST
501: IAVSGKEKQR SMFPKRSFRY KHRARGTEAL PKAILNRRKA QRYWVWGLSS AALALVLFLV FLLLR
001: MGAQIILSEG FEVVPPPEMN DLVLFGSNQS VSSCDVSTVT TEDGTVFSGD SSPGGATEED FPEEKPFSFY FVKQPAYDDP EIKAKIDEAG HEINRYNKDR
101: IVVSNAQESE KAEILSLFGQ MKSLVSKSEG YRVVIEEKKM EFDALHESLR NLRCSTSDQL CFSKEELDHL IYIAHYQIEH GSIGFEEEDW VLKETEKADG
201: IVLSEDSLAE KEASINRVKS MAVELNEVKK ELDAITWKIN HLSDKVGKSQ NNLRVLDVKK AHILEERDRS YERIKMLRIQ RDKGKAAFYQ SLPVMRKARE
301: LAASGNVRDL EVFASSEADR FMTQWNDDKA FRDDYVKRIS PSLCERQLNQ DGRIKDPEVQ VVWEKKVPVK GGEKVHETNR EDSSSNSSQY GSVITDKRKK
401: ETRKKAMDFN RSSAEESDVT DLEFSVYEKP KKEEEEVDEE TLKEREREEQ LEKARLAMER KRKLQEKAAA KAAIRAQKEA EKKLKECEKK AKKKAAANSS
501: SPSESDHSQE VTKDLEKVRT LAVSGKEKHQ KERSLFPKQR SFRYKHRGRG TEALPKAILN RRKAHKYWVW GLSSAALAVA LFLVVLLLR
101: IVVSNAQESE KAEILSLFGQ MKSLVSKSEG YRVVIEEKKM EFDALHESLR NLRCSTSDQL CFSKEELDHL IYIAHYQIEH GSIGFEEEDW VLKETEKADG
201: IVLSEDSLAE KEASINRVKS MAVELNEVKK ELDAITWKIN HLSDKVGKSQ NNLRVLDVKK AHILEERDRS YERIKMLRIQ RDKGKAAFYQ SLPVMRKARE
301: LAASGNVRDL EVFASSEADR FMTQWNDDKA FRDDYVKRIS PSLCERQLNQ DGRIKDPEVQ VVWEKKVPVK GGEKVHETNR EDSSSNSSQY GSVITDKRKK
401: ETRKKAMDFN RSSAEESDVT DLEFSVYEKP KKEEEEVDEE TLKEREREEQ LEKARLAMER KRKLQEKAAA KAAIRAQKEA EKKLKECEKK AKKKAAANSS
501: SPSESDHSQE VTKDLEKVRT LAVSGKEKHQ KERSLFPKQR SFRYKHRGRG TEALPKAILN RRKAHKYWVW GLSSAALAVA LFLVVLLLR
Arabidopsis Description
PPI2PPI2 [Source:UniProtKB/TrEMBL;Acc:A0A178VC28]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.