CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16408

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	KRH16408	AT2G18960.1	12182706
AT4G27500.1	KRH16408	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27251	Soybean	endoplasmic reticulum, nucleus	86.69	88.41
KRH55252	Soybean	nucleus	67.05	62.11
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	52.27	56.89
AT4G27500.1	Thale cress	nucleus	52.11	52.45
Solyc07g063100.2.1	Tomato	nucleus	51.79	50.8
CDX89242	Canola	cytoskeleton, cytosol, nucleus	34.9	50.12
GSMUA_Achr6P21610_001	Banana	cytosol	34.42	49.65
PGSC0003DMT400032400	Potato	nucleus	50.49	49.44
Bra019045.1-P	Field mustard	nucleus	47.89	48.76
CDY29843	Canola	nucleus	47.24	48.5
Bra026343.1-P	Field mustard	nucleus	49.19	47.79
Solyc12g013860.1.1	Tomato	unclear	25.65	47.59
CDX97389	Canola	nucleus	47.56	47.56
CDY56314	Canola	nucleus	35.39	46.88
CDY14276	Canola	nucleus	46.59	46.14
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	43.99	44.5
EER96610	Sorghum	nucleus	44.32	44.25
Zm00001d005636_P001	Maize	nucleus	43.67	43.6
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	24.03	43.4
Os09t0346400-01	Rice	golgi, plasma membrane	43.67	42.9
Zm00001d020175_P002	Maize	golgi, plasma membrane	44.32	42.39
HORVU5Hr1G041880.1	Barley	nucleus	42.69	42.28
Os08t0390000-02	Rice	nucleus	42.21	41.87
EER96609	Sorghum	cytosol	21.43	41.38
TraesCS5A01G186800.1	Wheat	nucleus	41.07	40.81
TraesCS5D01G192100.1	Wheat	nucleus	42.21	40.75
HORVU4Hr1G058930.1	Barley	nucleus	36.53	40.69
TraesCS5B01G185200.2	Wheat	nucleus	41.4	40.48
HORVU0Hr1G030120.1	Barley	nucleus, plastid	42.69	39.08
Bra010401.1-P	Field mustard	nucleus	46.75	38.55
CDY26009	Canola	nucleus	23.86	36.75
Bra019016.1-P	Field mustard	nucleus	23.54	36.52
CDY24116	Canola	nucleus	23.38	36.18
CDY56315	Canola	nucleus	6.17	35.85
AT1G53110.1	Thale cress	nucleus	24.68	34.62
CDX98546	Canola	nucleus	31.49	34.34
Bra001590.1-P	Field mustard	nucleus	32.95	34.29
Bra027261.1-P	Field mustard	nucleus	31.49	34.28
AT5G36780.1	Thale cress	nucleus	31.98	34.2
AT5G36690.1	Thale cress	nucleus	31.98	34.2
CDX97649	Canola	nucleus	30.19	33.63
AT3G15340.3	Thale cress	nucleus	31.98	33.45
CDX82440	Canola	nucleus	31.49	31.44
CDX75821	Canola	nucleus	30.52	30.82
KRH66595	Soybean	nucleus	4.06	20.33
KRH49503	Soybean	endoplasmic reticulum	24.19	11.5
KRH00096	Soybean	nucleus	7.79	11.37
KRG89178	Soybean	endoplasmic reticulum, nucleus	24.19	9.93

Protein Annotations

EntrezGene:100819875	MapMan:35.1	EMBL:ACUP02008379	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G276500	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0010155	GO:GO:0016020	GO:GO:0016021	UniProt:I1M375	EnsemblPlants:KRH22077
ProteinID:KRH22077	ProteinID:KRH22077.1	ProteinID:KRH22078.1	ProteinID:KRH22079.1	InterPro:PPI	PANTHER:PTHR32219
PANTHER:PTHR32219:SF2	SUPFAM:SSF57997	TMHMM:TMhelix	UniParc:UPI000233B805	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:37795486..37800429

Molecular Weight (calculated)

69394.7 Da

IEP (calculated)

9.634

GRAVY (calculated)

-0.895

Length

616 amino acids

Sequence
(BLAST)

001: MAVEVVGFEM VQGPVENGTG GKPVLNEKEN GKLEKDVGAA DAIKFGTHGE ESAKTEGIDV SDVNAPKDAA EDWPAPKQIH SFYFVRWRPY DDPTIKSKID
101: LSDKDISKKN QARFQITEAL KAKRSERAEL ISQVKSLRGD SRQFQSIVDE KLKEIGPLQQ ALGKLRTTNN AGRGGLCSSE DELNSVIYSL QYRIQHESIP
201: LTEEKQILRE IKQLEGTREK VIANAAMRAK LQESMGQKET IQDQVKLIGG DLDGVKKERE AIRSKIKQID DALKAIDKDI QSLQEELTAV SQKRDKAFES
301: MQQLRKQREE GNTYFYQSRT VLNKARELAA KKDINALDEV SQTEVEKFMA LWNKDKAFRN DYEKRILASL DMRQLSRDGR MRNPDEKPIL EEPKPAEAEA
401: LPKTFTKQPK EEPKPSPQET LPAQKESKNK GRDLKSKPES KDVAETDEYE FKNPQKEAPA KECEIDPAKL KEMKREEEIA KAKQALERKK KLAEKAAAKA
501: AIRAQKEAEK KLKDREKKAK KKSGAAAVAN PEDEPKDEVV EATEPEKVND DVQVLAPVKE KVQKESGIRS RGRARGPDSI PKAIIKRKKS NNYLIWAAAA
601: ALLVLLLAVL GYIYLF

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.