Factsheet for Bra019045.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024452.1-P
Bra038835.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	Bra024452.1-P	AT2G18960.1	12182706
AT4G27500.1	Bra038835.1-P	AT2G18960.1	12182706
AT4G27500.1	Bra024452.1-P	AT2G18960.1	16279950
AT4G27500.1	Bra038835.1-P	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29843	Canola	nucleus	97.85	98.67
AT4G27500.1	Thale cress	nucleus	69.92	69.12
Bra026343.1-P	Field mustard	nucleus	70.41	67.19
Bra010401.1-P	Field mustard	nucleus	70.58	57.16
KRH22077	Soybean	endoplasmic reticulum	48.76	47.89
KRH27251	Soybean	endoplasmic reticulum, nucleus	46.94	47.02
PGSC0003DMT400032400	Potato	nucleus	48.76	46.9
GSMUA_Achr6P21610_001	Banana	cytosol	33.06	46.84
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	43.8	46.82
Solyc07g063100.2.1	Tomato	nucleus	48.59	46.82
KRH55252	Soybean	nucleus	48.43	44.06
Solyc12g013860.1.1	Tomato	unclear	23.97	43.67
HORVU5Hr1G041880.1	Barley	nucleus	43.8	42.6
Zm00001d005636_P001	Maize	nucleus	43.31	42.46
EER96610	Sorghum	nucleus	43.14	42.3
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	23.8	42.23
TraesCS5A01G186800.1	Wheat	nucleus	42.15	41.13
EER96609	Sorghum	cytosol	21.65	41.07
HORVU4Hr1G058930.1	Barley	nucleus	37.52	41.05
Zm00001d020175_P002	Maize	golgi, plasma membrane	43.47	40.84
TraesCS5B01G185200.2	Wheat	nucleus	42.31	40.63
TraesCS5D01G192100.1	Wheat	nucleus	42.64	40.44
Os08t0390000-02	Rice	nucleus	40.99	39.94
Os09t0346400-01	Rice	golgi, plasma membrane	41.16	39.71
HORVU0Hr1G030120.1	Barley	nucleus, plastid	43.8	39.38
Bra019016.1-P	Field mustard	nucleus	22.98	35.01
Bra001590.1-P	Field mustard	nucleus	33.55	34.29
Bra027261.1-P	Field mustard	nucleus	29.59	31.63
Bra025862.1-P	Field mustard	nucleus	21.98	9.49

Protein Annotations

EnsemblPlants:Bra019045.1	EnsemblPlants:Bra019045.1-P	EnsemblPlantsGene:Bra019045	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155
GO:GO:0016020	GO:GO:0016021	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002540B2E	UniProt:M4DRA2	MapMan:35.1	:

Description

AT4G27500 (E=5e-191) PPI1 | PPI1 (PROTON PUMP INTERACTOR 1); protein binding

Coordinates

chrA03:+:26572879..26575086

Molecular Weight (calculated)

68452.0 Da

IEP (calculated)

9.793

GRAVY (calculated)

-0.913

Length

605 amino acids

Sequence
(BLAST)

001: MGVEVVKFGG FEVAPAPFEG KPETNGKVVD KVAIKDADKP PKKAEESPNN NVLISDVPKD AAEEWPAAKQ IRSFYFVKYR HFDDPKIKAK LDVADKELEK
101: LSKARSAVYE QLKAKRAERS ELFDLLDPLK TERQGYNTKF DEKRKEMEPL QQALGKLRGN DGGSARGPAI CSSEEELNNM IYSYQYRIQH ESIPLTEEKQ
201: LLKEIRLLEG TRDKVIANEA VRAKIKESMG QKDDIQGQVK LMGAGLDGVK KERQAISARI NQLSEKVKAA KDEIQVLENE LKTVTEKRDK AYSNIRELRK
301: QRDENNSGFY QGRVVLNKAR DLAAQKNVEE LEALSNAEVE KFISLWCSKK NFREDYEKRL LPSLDARQLS RDGRMRNPEE KPLIAPEAPP QAKAVTEVVP
401: KAKAKQQQPK EEPVSAPKPE APAVQKTEKK GKDAAKVKNV VVADEEEDEE VYGLGKPQEE KKKVDEAALR EMRKQEEIAK AKLAMERKKK QAEKAAAKAA
501: KRALMEAEKK EKKEREKKAK KSGIEAVSEE VPEASEAEKE ETEAPVEEKP QKEKPVRNRI RTRGGPETLP RAILKRKKAT NYWIYAAPAA LVVLMLLVLG
601: YYYVL

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.