Factsheet for GSMUA_Achr6P21610_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P19560_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	GSMUA_Achr7P19560_001	AT2G18960.1	12182706
AT4G27500.1	GSMUA_Achr7P19560_001	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	37.94	47.51
EER96609	Sorghum	cytosol	33.26	44.51
CDX89242	Canola	cytoskeleton, cytosol, nucleus	42.86	42.66
Solyc12g013860.1.1	Tomato	unclear	33.02	42.47
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	55.97	42.23
CDY56314	Canola	nucleus	45.67	41.94
KRH27251	Soybean	endoplasmic reticulum, nucleus	49.18	34.77
KRH22077	Soybean	endoplasmic reticulum	49.65	34.42
HORVU4Hr1G058930.1	Barley	nucleus	44.03	34.0
Bra019045.1-P	Field mustard	nucleus	46.84	33.06
CDY29843	Canola	nucleus	46.37	33.0
AT4G27500.1	Thale cress	nucleus	47.07	32.84
EER96610	Sorghum	nucleus	47.31	32.74
Os09t0346400-01	Rice	golgi, plasma membrane	47.78	32.54
Os08t0390000-02	Rice	nucleus	46.6	32.05
Zm00001d005636_P001	Maize	nucleus	46.14	31.93
KRH55252	Soybean	nucleus	49.41	31.73
Zm00001d020175_P002	Maize	golgi, plasma membrane	47.31	31.37
HORVU5Hr1G041880.1	Barley	nucleus	45.67	31.35
TraesCS5A01G186800.1	Wheat	nucleus	45.43	31.29
TraesCS5B01G185200.2	Wheat	nucleus	45.2	30.63
TraesCS5D01G192100.1	Wheat	nucleus	45.43	30.41
PGSC0003DMT400032400	Potato	nucleus	44.26	30.05
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	42.15	29.56
Bra026343.1-P	Field mustard	nucleus	43.79	29.5
Solyc07g063100.2.1	Tomato	nucleus	43.33	29.46
CDX97389	Canola	nucleus	42.39	29.38
CDY14276	Canola	nucleus	42.39	29.1
HORVU0Hr1G030120.1	Barley	nucleus, plastid	45.67	28.97
Bra010401.1-P	Field mustard	nucleus	42.39	24.23
Bra001590.1-P	Field mustard	nucleus	29.27	21.11
CDX75821	Canola	nucleus	28.57	20.0
CDX82440	Canola	nucleus	28.81	19.94
CDX97649	Canola	nucleus	24.82	19.17
CDX98546	Canola	nucleus	25.29	19.11
CDY26009	Canola	nucleus	17.8	19.0
AT1G53110.1	Thale cress	nucleus	19.2	18.68
Bra019016.1-P	Field mustard	nucleus	17.33	18.64
AT5G36780.1	Thale cress	nucleus	24.82	18.4
AT5G36690.1	Thale cress	nucleus	24.82	18.4
CDY24116	Canola	nucleus	17.1	18.34
Bra027261.1-P	Field mustard	nucleus	24.12	18.2
AT3G15340.3	Thale cress	nucleus	24.59	17.83
CDY56315	Canola	nucleus	2.58	10.38
GSMUA_AchrUn_...	Banana	nucleus	20.37	6.93
GSMUA_Achr7P20610_001	Banana	nucleus	20.84	6.41

Protein Annotations

EnsemblPlants:GSMUA_Achr6P21610_001	EnsemblPlants:GSMUA_Achr6T21610_001	EnsemblPlantsGene:GSMUA_Achr6G21610_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155
GO:GO:0016020	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	SEG:seg
UniParc:UPI0002958E27	UniProt:M0T909	MapMan:35.1	:	:	:

Description

proton pump interactor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G21610_001]

Coordinates

chr6:+:18107604..18116384

Molecular Weight (calculated)

48622.5 Da

IEP (calculated)

5.773

GRAVY (calculated)

-0.883

Length

427 amino acids

Sequence
(BLAST)

001: MVVETLEHDT TQDNVKGTEG DTKQGQGPEE PVSFGLVDNS NGANGDVKEG DHLTDANLPK DAVDEWPAAK KIHTFYFIRY RTIEDPKLKA KIDHADKEIT
101: KSTQSRLQIT EALKAKRSER SNVISQLKPL TAEDKQYRMI MDEKRKSMEP LQDALGKLRS ANIAVREKGV GLCSSEEELN DLIYSLHYRM QHETLTLVEE
201: KQLIKEIKLL EGTREKVIAN ATEKAKIQDS YGHRDAIQGQ VKLINDDIGG IKKEKQAVRM KIKDLEEELK AIDDEISSLQ EELDVINKKR NKAYETLIEL
301: RKSRDEVNAC YFQNRSLLNR AKDLAAKKDI TSLEDLMHSE VEQFMSEWSS NKAFREDYEK RILSSLDSRQ LSRDGRMRNP DEKPIISEAP ATRDVENLPA
401: KVNAKQASSA KEAKEDKLVP PQQDLHP

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.