Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24116 | Canola | nucleus | 82.25 | 82.66 |
| AT1G53110.1 | Thale cress | nucleus | 56.75 | 51.71 |
| CDX97649 | Canola | nucleus | 43.0 | 31.1 |
| CDX98546 | Canola | nucleus | 43.25 | 30.62 |
| CDX82440 | Canola | nucleus | 43.25 | 28.04 |
| CDX75821 | Canola | nucleus | 42.75 | 28.03 |
| KRH27251 | Soybean | endoplasmic reticulum, nucleus | 36.25 | 24.01 |
| KRH22077 | Soybean | endoplasmic reticulum | 36.75 | 23.86 |
| CDY29843 | Canola | nucleus | 33.25 | 22.17 |
| VIT_19s0014g02640.t01 | Wine grape | extracellular, nucleus | 30.75 | 21.73 |
| CDX97389 | Canola | nucleus | 33.25 | 21.59 |
| CDY14276 | Canola | nucleus | 33.0 | 21.22 |
| Solyc07g063100.2.1 | Tomato | nucleus | 32.75 | 20.86 |
| HORVU5Hr1G041880.1 | Barley | nucleus | 32.25 | 20.74 |
| PGSC0003DMT400032400 | Potato | nucleus | 32.5 | 20.67 |
| KRH55252 | Soybean | nucleus | 34.25 | 20.6 |
| EER96610 | Sorghum | nucleus | 31.5 | 20.42 |
| TraesCS5A01G186800.1 | Wheat | nucleus | 31.5 | 20.32 |
| TraesCS5B01G185200.2 | Wheat | nucleus | 32.0 | 20.32 |
| Zm00001d005636_P001 | Maize | nucleus | 31.0 | 20.1 |
| Os09t0346400-01 | Rice | golgi, plasma membrane | 31.25 | 19.94 |
| TraesCS5D01G192100.1 | Wheat | nucleus | 31.75 | 19.91 |
| Os08t0390000-02 | Rice | nucleus | 30.25 | 19.48 |
| Zm00001d020175_P002 | Maize | golgi, plasma membrane | 31.25 | 19.41 |
| HORVU4Hr1G058930.1 | Barley | nucleus | 26.75 | 19.35 |
| HORVU0Hr1G030120.1 | Barley | nucleus, plastid | 32.25 | 19.17 |
| CDY19058 | Canola | endoplasmic reticulum, nucleus, plastid | 29.0 | 19.05 |
| CDX89242 | Canola | cytoskeleton, cytosol, nucleus | 19.75 | 18.41 |
| CDY56315 | Canola | nucleus | 4.75 | 17.92 |
| GSMUA_Achr6P21610_001 | Banana | cytosol | 19.0 | 17.8 |
| CDY56314 | Canola | nucleus | 20.5 | 17.63 |
| EER96609 | Sorghum | cytosol | 13.5 | 16.93 |
| HORVU2Hr1G081330.1 | Barley | cytosol, nucleus | 14.0 | 16.42 |
| Solyc12g013860.1.1 | Tomato | unclear | 10.5 | 12.65 |
| CDY29491 | Canola | nucleus | 19.75 | 5.72 |
| CDY04588 | Canola | nucleus | 19.5 | 5.7 |
Protein Annotations
| MapMan:35.1 | GO:A0A078GL85 | UniProt:A0A078GL85 | EnsemblPlants:CDY26009 | ProteinID:CDY26009 | ProteinID:CDY26009.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010155 | GO:GO:0016020 | GO:GO:0016021 |
| EnsemblPlantsGene:GSBRNA2T00033546001 | InterPro:PPI | PANTHER:PTHR32219 | PANTHER:PTHR32219:SF2 | TMHMM:TMhelix | UniParc:UPI0004EB2091 |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g06150DBnaC06g06150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL85]
Coordinates
chrLK032184:-:191275..193209
Molecular Weight (calculated)
47002.7 Da
IEP (calculated)
6.922
GRAVY (calculated)
-0.960
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSPVSLCNG GLDARRLVIG DLSSRETTEE EDDYAVFSGE EEEEEEEEEE EDGWREDRFC FYFVKQFAYD DPEIKAKIDE ADNEIYNCNS ERIHIANRLK
101: AKRAERLSLM SSLDVMKDQE TTNRLSEVKM EMELLDAQMG CVLDQRDRAF ERIKLLRIQR DKGNAAFFQS RAVMKKAIEL AACGNFRDLE ELAYSEVDKF
201: MSRWNNDKAF RDDYKKRILP SRKLRGNEQI RSSECDVDTE NRDETAIELK RFCTEEEEES DKEALKEKRR EEQLEKARLA MERKRKLHEK AAAKAAIRAK
301: KEAEKKLKEL EKRAKKKKVL ERTPETVTEA SEPEKEKPLN GRSVSWNQRS LRYRHHKKGN ENVPKAILKR RRAYRLWVWS VSSAALALPL ALFIVFFYVR
101: AKRAERLSLM SSLDVMKDQE TTNRLSEVKM EMELLDAQMG CVLDQRDRAF ERIKLLRIQR DKGNAAFFQS RAVMKKAIEL AACGNFRDLE ELAYSEVDKF
201: MSRWNNDKAF RDDYKKRILP SRKLRGNEQI RSSECDVDTE NRDETAIELK RFCTEEEEES DKEALKEKRR EEQLEKARLA MERKRKLHEK AAAKAAIRAK
301: KEAEKKLKEL EKRAKKKKVL ERTPETVTEA SEPEKEKPLN GRSVSWNQRS LRYRHHKKGN ENVPKAILKR RRAYRLWVWS VSSAALALPL ALFIVFFYVR
001: MSASILLCDG FDVRRILTGK LNGDESSTVT TEEDDEAVFS GEEWCGESSY CFYFVKQFAY DDPEIKAKID EADHEVYHCN TDRIHIANRL KSKRAARLSL
101: VASMETLMSM KINEVEKEQE VVRGRIYRLG ERLSEIKMEI ELLDVQMACV LNQRDKAVER IKFLRMQRDK GNAAFYQSRV VMKKAIELAA SGNVRDLEEL
201: ADSEVEKFMS RWNNDKAFRD NYKKRILPSV NERKLRCDVQ IRDLEGNLDT ENGNETVVKK AIEYKRFSTE EESDDFDIPV YEKLGKEEKE IDEETLKEKK
301: REEQLEKARL AMERKRKLHE KAAAKAVIRV KKEAEKKRKE LDKRAKKKKA VCKSSSVDVD RTTETVSEAS KPEKEKLLNG RSVFPKQRSY NYRYHGKGND
401: AVLKAIIKRR KAYRLWVWTV SSAAVALPLA LLVVFYYVR
101: VASMETLMSM KINEVEKEQE VVRGRIYRLG ERLSEIKMEI ELLDVQMACV LNQRDKAVER IKFLRMQRDK GNAAFYQSRV VMKKAIELAA SGNVRDLEEL
201: ADSEVEKFMS RWNNDKAFRD NYKKRILPSV NERKLRCDVQ IRDLEGNLDT ENGNETVVKK AIEYKRFSTE EESDDFDIPV YEKLGKEEKE IDEETLKEKK
301: REEQLEKARL AMERKRKLHE KAAAKAVIRV KKEAEKKRKE LDKRAKKKKA VCKSSSVDVD RTTETVSEAS KPEKEKLLNG RSVFPKQRSY NYRYHGKGND
401: AVLKAIIKRR KAYRLWVWTV SSAAVALPLA LLVVFYYVR
Arabidopsis Description
PPI4Proton pump-interactor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZN4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.