Factsheet for VIT_19s0014g02640.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 4
plastid 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g01030.t01
VIT_02s0012g00950.t01
VIT_19s0090g00010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	VIT_01s0011g01030.t01	AT2G18960.1	12182706
AT4G27500.1	VIT_02s0012g00950.t01	AT2G18960.1	12182706
AT4G27500.1	VIT_19s0090g00010.t01	AT2G18960.1	12182706
AT4G27500.1	VIT_01s0011g01030.t01	AT2G18960.1	16279950
AT4G27500.1	VIT_02s0012g00950.t01	AT2G18960.1	16279950
AT4G27500.1	VIT_19s0090g00010.t01	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P21610_001	Banana	cytosol	42.23	55.97
KRH22077	Soybean	endoplasmic reticulum	56.89	52.27
CDX89242	Canola	cytoskeleton, cytosol, nucleus	39.22	51.75
KRH27251	Soybean	endoplasmic reticulum, nucleus	53.89	50.5
KRH55252	Soybean	nucleus	57.77	49.17
CDY56314	Canola	nucleus	39.58	48.17
AT4G27500.1	Thale cress	nucleus	50.53	46.73
Solyc12g013860.1.1	Tomato	unclear	27.39	46.69
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	27.39	45.45
CDX97389	Canola	nucleus	49.12	45.13
Solyc07g063100.2.1	Tomato	nucleus	49.65	44.75
CDY29843	Canola	nucleus	46.82	44.17
Bra019045.1-P	Field mustard	nucleus	46.82	43.8
CDY14276	Canola	nucleus	47.35	43.09
PGSC0003DMT400032400	Potato	nucleus	47.53	42.77
EER96609	Sorghum	cytosol	24.03	42.63
Bra026343.1-P	Field mustard	nucleus	46.11	41.17
EER96610	Sorghum	nucleus	44.35	40.68
HORVU4Hr1G058930.1	Barley	nucleus	39.58	40.51
Zm00001d005636_P001	Maize	nucleus	43.46	39.87
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	42.05	39.08
Os08t0390000-02	Rice	nucleus	42.58	38.81
Zm00001d020175_P002	Maize	golgi, plasma membrane	43.99	38.66
HORVU5Hr1G041880.1	Barley	nucleus	42.4	38.59
Os09t0346400-01	Rice	golgi, plasma membrane	42.58	38.44
TraesCS5A01G186800.1	Wheat	nucleus	41.52	37.9
TraesCS5B01G185200.2	Wheat	nucleus	41.34	37.14
TraesCS5D01G192100.1	Wheat	nucleus	41.52	36.83
Bra010401.1-P	Field mustard	nucleus	48.23	36.55
HORVU0Hr1G030120.1	Barley	nucleus, plastid	43.11	36.26
Bra001590.1-P	Field mustard	nucleus	32.69	31.25
CDY24116	Canola	nucleus	21.91	31.16
CDY26009	Canola	nucleus	21.73	30.75
Bra019016.1-P	Field mustard	nucleus	21.55	30.73
CDX98546	Canola	nucleus	29.86	29.91
AT1G53110.1	Thale cress	nucleus	22.61	29.16
CDX97649	Canola	nucleus	28.27	28.93
AT3G15340.3	Thale cress	nucleus	30.04	28.86
Bra027261.1-P	Field mustard	nucleus	28.45	28.45
AT5G36780.1	Thale cress	nucleus	28.8	28.3
AT5G36690.1	Thale cress	nucleus	28.8	28.3
CDX82440	Canola	nucleus	30.21	27.71
CDX75821	Canola	nucleus	29.68	27.54
CDY56315	Canola	nucleus	3.18	16.98
VIT_18s0122g00410.t01	Wine grape	nucleus	23.67	9.07

Protein Annotations

EntrezGene:100267528	wikigene:100267528	MapMan:35.1	EMBL:AM481573	ProteinID:CAN81802	ProteinID:CAN81802.1
ProteinID:CCB46337	ProteinID:CCB46337.1	ncoils:Coil	UniProt:F6H241	EMBL:FN595229	GO:GO:0000166
GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003779	GO:GO:0003824	GO:GO:0003871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005856	GO:GO:0005886	GO:GO:0006508	GO:GO:0006810
GO:GO:0007018	GO:GO:0008017	GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0008270
GO:GO:0009058	GO:GO:0009086	GO:GO:0009987	GO:GO:0010155	GO:GO:0016020	GO:GO:0016021
GO:GO:0016459	GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	GO:GO:0032259	EntrezGene:LOC100267528
wikigene:LOC100267528	InterPro:PPI	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	UniParc:UPI0002109D57	ArrayExpress:VIT_19s0014g02640
EnsemblPlantsGene:VIT_19s0014g02640	EnsemblPlants:VIT_19s0014g02640.t01	unigene:Vvi.6683	RefSeq:XP_002285016	RefSeq:XP_002285016.2	SEG:seg

Description

No Description!

Coordinates

chr19:-:2703212..2708405

Molecular Weight (calculated)

63817.9 Da

IEP (calculated)

6.924

GRAVY (calculated)

-0.808

Length

566 amino acids

Sequence
(BLAST)

001: MCSFVPDNCK INGLCYYSSF VAFSISFGDT MGVEVVGFEA APAPVEAGTE AESALLHDKE NGKLDQGPGV TEPIKFGSHG DEPVKGEGNN VSDNFPKDVV
101: DEWPAPKQIH SFYFVKYRSY DDPKIKAKLD QADKEIQRRN QARFQITEGL RAKKSDRAQM LSQLKSLKAE DEQFRMIVDG KRKEMEPLQH ALGKLRSTNS
201: ANRERGGTLC SSEEELNDLI QSLHYHMQHE SIPLAEEKQI LREIKQLEAT REKVIAGAAM RAKIQDSLGQ KEAIQDQVKL IGVDLDGVRK EKQVVMAKIK
301: QLRDDLKGID SEIDSLMEEL KAVSEKRDKA YEGLQALRKQ RDEGNAHFYQ NRALLNNARE LAGKKDIKAL EELSHSEVEK FMSLWSSNKA FREDYEKRIL
401: PSLDSRQLSR DGRMRNPDEK PLVVLEAPTP SETETVAKAP VKRSKEDSKP PPQHDTLPSQ KVQKEANDRA TDSGITLERG DKEEKEIIPG LEKHQKGPSL
501: DNEVDAAKLK EMKREEEIAK AKLALERKKK LADKSAAKAA IRAQKEAEKK LKEIITSLFI FLEFAN

Best Arabidopsis Sequence Match ( AT4G27500.2 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEITFS FLLYLNALCI LLSPF

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.