Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29843 | Canola | nucleus | 56.6 | 10.0 |
| CDX97389 | Canola | nucleus | 49.06 | 8.44 |
| CDY14276 | Canola | nucleus | 49.06 | 8.36 |
| AT4G27500.1 | Thale cress | nucleus | 47.17 | 8.17 |
| Solyc07g063100.2.1 | Tomato | nucleus | 44.34 | 7.48 |
| PGSC0003DMT400032400 | Potato | nucleus | 43.4 | 7.31 |
| Os09t0346400-01 | Rice | golgi, plasma membrane | 36.79 | 6.22 |
| KRH22077 | Soybean | endoplasmic reticulum | 35.85 | 6.17 |
| HORVU5Hr1G041880.1 | Barley | nucleus | 35.85 | 6.11 |
| TraesCS5B01G185200.2 | Wheat | nucleus | 35.85 | 6.03 |
| TraesCS5A01G186800.1 | Wheat | nucleus | 34.91 | 5.97 |
| TraesCS5D01G192100.1 | Wheat | nucleus | 35.85 | 5.96 |
| KRH27251 | Soybean | endoplasmic reticulum, nucleus | 33.02 | 5.79 |
| Zm00001d005636_P001 | Maize | nucleus | 33.02 | 5.67 |
| EER96610 | Sorghum | nucleus | 33.02 | 5.67 |
| HORVU0Hr1G030120.1 | Barley | nucleus, plastid | 35.85 | 5.65 |
| Zm00001d020175_P002 | Maize | golgi, plasma membrane | 33.96 | 5.59 |
| CDY19058 | Canola | endoplasmic reticulum, nucleus, plastid | 28.3 | 4.93 |
| Os08t0390000-02 | Rice | nucleus | 28.3 | 4.83 |
| CDY24116 | Canola | nucleus | 17.92 | 4.77 |
| CDY26009 | Canola | nucleus | 17.92 | 4.75 |
| KRH55252 | Soybean | nucleus | 29.25 | 4.66 |
| CDX75821 | Canola | nucleus | 25.47 | 4.43 |
| HORVU2Hr1G081330.1 | Barley | cytosol, nucleus | 14.15 | 4.4 |
| CDX98546 | Canola | nucleus | 22.64 | 4.25 |
| CDX97649 | Canola | nucleus | 21.7 | 4.16 |
| CDX82440 | Canola | nucleus | 22.64 | 3.89 |
| CDY56314 | Canola | nucleus | 16.04 | 3.66 |
| Solyc12g013860.1.1 | Tomato | unclear | 11.32 | 3.61 |
| CDX89242 | Canola | cytoskeleton, cytosol, nucleus | 14.15 | 3.5 |
| VIT_19s0014g02640.t01 | Wine grape | extracellular, nucleus | 16.98 | 3.18 |
| EER96609 | Sorghum | cytosol | 9.43 | 3.13 |
| HORVU4Hr1G058930.1 | Barley | nucleus | 15.09 | 2.89 |
| GSMUA_Achr6P21610_001 | Banana | cytosol | 10.38 | 2.58 |
| CDY04588 | Canola | nucleus | 16.04 | 1.24 |
| CDY29491 | Canola | nucleus | 16.04 | 1.23 |
Protein Annotations
| MapMan:35.2 | GO:A0A078J047 | UniProt:A0A078J047 | EnsemblPlants:CDY56315 | ProteinID:CDY56315 | ProteinID:CDY56315.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010155 | GO:GO:0016020 | GO:GO:0016021 |
| EnsemblPlantsGene:GSBRNA2T00019427001 | InterPro:PPI | PANTHER:PTHR32219 | PANTHER:PTHR32219:SF2 | TMHMM:TMhelix | UniParc:UPI0004EF1E7A |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g50310DBnaC07g50310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J047]
Coordinates
chrLK033478:+:6716..7402
Molecular Weight (calculated)
12110.8 Da
IEP (calculated)
9.928
GRAVY (calculated)
-0.796
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAEKKEKKE REKKAKKSGI EAVSEEAPEA SEAEKEEIEA PVEEKPQKEK ALKEKPVRNR IRTRGGPETL PRAILKRKKA TNYWIYAAPA ALVVLMLLVL
101: GYYYVL
101: GYYYVL
001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL
Arabidopsis Description
PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.