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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • cytosol 1
  • peroxisome 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:cytosol, peroxisome
BaCelLo:cytosol
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX82608
CDX89242
CDX97389
CDY14177
CDY14276
CDY19058
CDY29843
CDY30294
CDY45897
CDY56314
CDY56315
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18960.1 CDX82608 AT2G18960.1 12182706
AT2G18960.1 CDY14177 AT2G18960.1 12182706
AT2G18960.1 CDY30294 AT2G18960.1 12182706
AT2G18960.1 CDY45897 AT2G18960.1 12182706
AT2G18960.1 CDY56511 AT2G18960.1 12182706
AT2G18960.1 CDY62140 AT2G18960.1 12182706
AT2G18960.1 CDY62141 AT2G18960.1 12182706
AT2G18960.1 CDY64741 AT2G18960.1 12182706
AT2G18960.1 CDX89242 AT4G27500.1 12182706
AT2G18960.1 CDX97389 AT4G27500.1 12182706
AT2G18960.1 CDY14276 AT4G27500.1 12182706
AT2G18960.1 CDY19058 AT4G27500.1 12182706
AT2G18960.1 CDY29843 AT4G27500.1 12182706
AT2G18960.1 CDY56314 AT4G27500.1 12182706
AT2G18960.1 CDY56315 AT4G27500.1 12182706
AT2G18960.1 CDX89242 AT4G27500.1 16279950
AT2G18960.1 CDX97389 AT4G27500.1 16279950
AT2G18960.1 CDY14276 AT4G27500.1 16279950
AT2G18960.1 CDY19058 AT4G27500.1 16279950
AT2G18960.1 CDY29843 AT4G27500.1 16279950
AT2G18960.1 CDY56314 AT4G27500.1 16279950
AT2G18960.1 CDY56315 AT4G27500.1 16279950
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY30294 Canola peroxisome 99.89 99.89
CDX82608 Canola peroxisome 99.16 99.16
AT2G18960.1 Thale cress peroxisome 97.89 97.89
CDY14186 Canola plasma membrane 92.62 93.61
CDY28167 Canola peroxisome 93.05 93.14
CDY67153 Canola peroxisome 89.88 92.92
CDY03545 Canola plastid 64.28 92.42
CDY51650 Canola plasma membrane 87.67 91.43
CDY51651 Canola plasma membrane 86.3 91.1
CDX72217 Canola peroxisome 87.36 91.1
CDX72218 Canola peroxisome 87.25 90.89
CDY56511 Canola peroxisome 83.77 88.63
PGSC0003DMT400010497 Potato cytosol, peroxisome, plasma membrane 88.72 88.45
CDY62140 Canola peroxisome 63.54 87.9
CDX91747 Canola plasma membrane 19.49 87.26
CDY42259 Canola peroxisome 86.72 86.54
CDY47940 Canola peroxisome 86.72 86.54
CDY25913 Canola peroxisome 86.51 86.24
CDY38294 Canola peroxisome 86.3 86.03
EES11577 Sorghum cytosol, peroxisome, plasma membrane 85.99 85.8
CDY45897 Canola extracellular 8.22 84.78
Os04t0656100-01 Rice plasma membrane 84.93 84.75
CDY62141 Canola cytosol, endoplasmic reticulum, plasma membrane 20.13 84.14
CDY09517 Canola cytosol, endoplasmic reticulum, plasma membrane 17.39 83.76
TraesCS2B01G530500.1 Wheat peroxisome 83.88 83.7
TraesCS2D01G503000.1 Wheat golgi, plastid, unclear 83.88 83.7
TraesCS2A01G502400.1 Wheat golgi 83.46 83.28
CDY39956 Canola plasma membrane 74.39 82.0
CDY69631 Canola cytosol, peroxisome, plasma membrane 45.21 81.87
CDY50939 Canola peroxisome 81.77 81.77
CDX87330 Canola plasma membrane 74.18 81.77
CDX93092 Canola peroxisome 81.66 81.66
CDY67606 Canola peroxisome 43.41 81.26
CDY14177 Canola extracellular 21.39 80.56
CDX79363 Canola plasma membrane 73.23 80.44
CDX67957 Canola peroxisome 75.45 80.0
CDY45757 Canola peroxisome 80.51 79.42
CDY34767 Canola peroxisome 79.35 78.77
HORVU2Hr1G111640.2 Barley plasma membrane 83.67 78.61
CDY30730 Canola plasma membrane 64.59 77.89
CDX76810 Canola plasma membrane 69.23 76.93
CDX96220 Canola endoplasmic reticulum, nucleus, plasma membrane 17.28 73.87
CDY41176 Canola peroxisome 73.34 72.42
CDX71820 Canola peroxisome 73.13 72.22
CDY56993 Canola peroxisome 71.44 71.59
CDY42692 Canola peroxisome 70.6 71.43
CDY39222 Canola plasma membrane 17.39 71.12
CDX96779 Canola plasma membrane 70.28 70.66
CDX76809 Canola cytosol, nucleus, peroxisome 11.38 70.59
CDX83917 Canola plasma membrane 70.18 70.55
CDY35173 Canola cytosol 22.02 65.11
CDY34800 Canola endoplasmic reticulum, plasma membrane, plastid 6.74 64.65
CDY08915 Canola plasma membrane 18.44 61.84
CDX76840 Canola plasma membrane 7.8 54.01
CDY28277 Canola cytosol 5.16 45.37
CDX98252 Canola nucleus 3.48 41.77
CDY24136 Canola mitochondrion 9.48 38.14
CDY09377 Canola endoplasmic reticulum, plasma membrane, vacuole 8.64 36.77
CDY45679 Canola cytosol, golgi, plastid 8.54 36.0
CDY13569 Canola cytosol 2.95 32.56
CDY26756 Canola mitochondrion 7.06 28.88
CDY33128 Canola plastid 6.32 27.15
CDY31231 Canola plastid 5.58 26.77
CDY50206 Canola endoplasmic reticulum 4.74 21.43
Protein Annotations
KEGG:00190+3.6.3.6Gene3D:1.20.1110.10MapMan:24.1.2.3.1Gene3D:3.40.1110.10GO:A0A078JGF6UniProt:A0A078JGF6
InterPro:ATPase_P-typ_P_siteInterPro:ATPase_P-typ_TM_dom_sfInterPro:ATPase_P-typ_cation-transptr_NInterPro:ATPase_P-typ_cyto_dom_NInterPro:ATPase_P-typ_transduc_dom_A_sfEnsemblPlants:CDY64741
ProteinID:CDY64741ProteinID:CDY64741.1ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0006139GO:GO:0006754GO:GO:0006810GO:GO:0006811GO:GO:0008150GO:GO:0008152
GO:GO:0008553GO:GO:0009058GO:GO:0009987GO:GO:0015992GO:GO:0016020GO:GO:0016021
GO:GO:0016787GO:GO:0016887GO:GO:0046872GO:GO:0120029GO:GO:1902600EnsemblPlantsGene:GSBRNA2T00042652001
InterPro:HAD-like_sfInterPro:IPR023299InterPro:P-type_ATPase_IIIAPFAM:PF00122PFAM:PF00690PFAM:PF00702
PRINTS:PR00119PRINTS:PR00120ScanProsite:PS00154PANTHER:PTHR42861PANTHER:PTHR42861:SF19InterPro:P_typ_ATPase
SMART:SM00831SUPFAM:SSF56784SUPFAM:SSF81653SUPFAM:SSF81665TIGRFAMs:TIGR01494TIGRFAMs:TIGR01647
TMHMM:TMhelixUniParc:UPI0004EE55DASEG:seg:::
Description
BnaCnng44750DPlasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A078JGF6]
Coordinates
chrLK034537:+:11439..17238
Molecular Weight (calculated)
104417.0 Da
IEP (calculated)
6.729
GRAVY (calculated)
0.076
Length
949 amino acids
Sequence
(BLAST)
001: MSGLEDIKNE TVDLEKIPIE EVFQQLKCTR EGLTTQEGED RIQIFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAAIMA IALANGDGRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TSIGNFCICS IAIGIVIEII VMYPIQRRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRIEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDSDGNWHR VSKGAPEQIL DLANARPDLR KKVFGCMDKY AERGLRSLAV ARQVVPEKTK ESLGAPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSAALLGT DKDSNIASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLREIF ATGIVLGGYQ AVMSVIFFWA IHKTDFFSDK FGVRSIRDNN DELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FVIAQLVATL
801: IAVYADWTFA KVKGIGWGWA GVIWIYSIVT YFPQDLLKFA IRYILSGKAW TSMFDNRTAF TTKKDYGIGE REAQWAQAQR TLHGLQPKEE VNIFPEKGGY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVAKLKGLDI DTAGHHYTV
Best Arabidopsis Sequence Match ( AT2G18960.1 )
(BLAST)
001: MSGLEDIKNE TVDLEKIPIE EVFQQLKCTR EGLTTQEGED RIVIFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAALMA IALANGDNRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TSIGNFCICS IAIGIAIEIV VMYPIQHRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRVEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDSDGNWHR VSKGAPEQIL DLANARPDLR KKVLSCIDKY AERGLRSLAV ARQVVPEKTK ESPGGPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSAALLGT DKDSNIASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLKEIF ATGIVLGGYQ AIMSVIFFWA AHKTDFFSDK FGVRSIRDNN DELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FVIAQLVATL
801: IAVYADWTFA KVKGIGWGWA GVIWIYSIVT YFPQDILKFA IRYILSGKAW ASLFDNRTAF TTKKDYGIGE REAQWAQAQR TLHGLQPKED VNIFPEKGSY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVAKLKGLDI DTAGHHYTV
Arabidopsis Description
AHA1Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VSN5]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.