CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus, plasma membrane
Any Predictor:	endoplasmic reticulum, nucleus, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39222	Canola	plasma membrane	88.29	84.48
CDY09517	Canola	cytosol, endoplasmic reticulum, plasma membrane	74.77	84.26
CDY62141	Canola	cytosol, endoplasmic reticulum, plasma membrane	85.14	83.26
CDY34800	Canola	endoplasmic reticulum, plasma membrane, plastid	24.77	55.56
CDY35173	Canola	cytosol	69.37	47.98
CDY14177	Canola	extracellular	37.84	33.33
CDX76840	Canola	plasma membrane	19.37	31.39
CDY08915	Canola	plasma membrane	37.39	29.33
CDX91747	Canola	plasma membrane	24.77	25.94
CDY03545	Canola	plastid	66.67	22.42
CDY64741	Canola	peroxisome	73.87	17.28
CDY30294	Canola	peroxisome	73.87	17.28
CDX82608	Canola	peroxisome	73.42	17.18
CDY28167	Canola	peroxisome	68.02	15.93
CDY14186	Canola	plasma membrane	67.12	15.87
CDY30730	Canola	plasma membrane	54.95	15.5
TraesCS4A01G247800.1	Wheat	plastid	22.52	15.43
CDY45897	Canola	extracellular	6.31	15.22
CDY56511	Canola	peroxisome	59.91	14.83
CDY39956	Canola	plasma membrane	56.76	14.63
CDX87330	Canola	plasma membrane	56.31	14.52
CDX76810	Canola	plasma membrane	55.41	14.4
CDX67957	Canola	peroxisome	56.76	14.08
CDY67153	Canola	peroxisome	55.41	13.4
CDY47940	Canola	peroxisome	57.21	13.35
CDY42259	Canola	peroxisome	57.21	13.35
CDY25913	Canola	peroxisome	57.21	13.34
CDY38294	Canola	peroxisome	57.21	13.34
CDY50939	Canola	peroxisome	56.31	13.17
CDX93092	Canola	peroxisome	56.31	13.17
CDX79363	Canola	plasma membrane	50.0	12.85
CDY34767	Canola	peroxisome	54.95	12.76
CDX98252	Canola	nucleus	4.5	12.66
CDY45757	Canola	peroxisome	54.5	12.58
CDY51650	Canola	plasma membrane	51.35	12.53
CDY51651	Canola	plasma membrane	50.45	12.46
CDX72217	Canola	peroxisome	50.9	12.42
CDX72218	Canola	peroxisome	50.45	12.29
CDX71820	Canola	peroxisome	47.75	11.03
CDY41176	Canola	peroxisome	47.3	10.93
CDY42692	Canola	peroxisome	44.14	10.45
CDX96779	Canola	plasma membrane	44.14	10.38
CDX83917	Canola	plasma membrane	44.14	10.38
CDY56993	Canola	peroxisome	43.69	10.24
CDY13569	Canola	cytosol	1.8	4.65
CDY28277	Canola	cytosol	1.8	3.7
CDY33128	Canola	plastid	1.8	1.81
CDX76809	Canola	cytosol, nucleus, peroxisome	0.9	1.31
CDY62140	Canola	peroxisome	0.45	0.15
CDY67606	Canola	peroxisome	0.0	0.0
CDY69631	Canola	cytosol, peroxisome, plasma membrane	0.0	0.0
Zm00001d029535_P001	Maize	cytosol, plasma membrane, plastid	0.0	0.0
CDY50206	Canola	endoplasmic reticulum	0.0	0.0
CDY45679	Canola	cytosol, golgi, plastid	0.0	0.0
CDY31231	Canola	plastid	0.0	0.0
CDY26756	Canola	mitochondrion	0.0	0.0
CDY24136	Canola	mitochondrion	0.0	0.0
CDY09377	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:CDX96220	EnsemblPlantsGene:GSBRNA2T00102325001	Gene3D:1.20.1110.10	GO:A0A078E2S2	InterPro:ATPase_P-typ_TM_dom_sf	ncoils:Coil
PANTHER:PTHR42861	PANTHER:PTHR42861:SF19	ProteinID:CDX96220	ProteinID:CDX96220.1	SUPFAM:SSF81665	TMHMM:TMhelix
UniParc:UPI0004EDC34A	MapMan:35.1	:	:	:	:

Description

BnaC02g14310D

Coordinates

chrLK031893:-:831943..833115

Molecular Weight (calculated)

25733.3 Da

IEP (calculated)

10.193

GRAVY (calculated)

0.165

Length

222 amino acids

Sequence
(BLAST)

001: MSVIFFWVIH KTDFCSFGVR SIRDNNDELM FAVYLQVSNI SQALIFVTRS RSWSFVERPG ALLMIAFVIA QLIATLIAVY ANWTFAKVKG IGWGWAAVIW
101: VYSILTYIPQ DILKFAIRYI LSGKAWVSMF DKRSALTTRR DYGAGERQAE WAREQRTQHG LQTRQEVNVF PENEGYRELS QIVEQAKKRA EIARNKAFAL
201: RVYIYIFSIV HAIELVFQKL SV

Best Arabidopsis Sequence Match ( AT2G18960.1 )
(BLAST)

001: MSGLEDIKNE TVDLEKIPIE EVFQQLKCTR EGLTTQEGED RIVIFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAALMA IALANGDNRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TSIGNFCICS IAIGIAIEIV VMYPIQHRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRVEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDSDGNWHR VSKGAPEQIL DLANARPDLR KKVLSCIDKY AERGLRSLAV ARQVVPEKTK ESPGGPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSAALLGT DKDSNIASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLKEIF ATGIVLGGYQ AIMSVIFFWA AHKTDFFSDK FGVRSIRDNN DELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FVIAQLVATL
801: IAVYADWTFA KVKGIGWGWA GVIWIYSIVT YFPQDILKFA IRYILSGKAW ASLFDNRTAF TTKKDYGIGE REAQWAQAQR TLHGLQPKED VNIFPEKGSY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVAKLKGLDI DTAGHHYTV

Arabidopsis Description

AHA1Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VSN5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.