CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82608
CDX89242
CDX97389
CDY14177
CDY14276
CDY19058
CDY29843
CDY30294
CDY45897
CDY56314
CDY56315
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18960.1	CDX82608	AT2G18960.1	12182706
AT2G18960.1	CDY14177	AT2G18960.1	12182706
AT2G18960.1	CDY30294	AT2G18960.1	12182706
AT2G18960.1	CDY45897	AT2G18960.1	12182706
AT2G18960.1	CDY56511	AT2G18960.1	12182706
AT2G18960.1	CDY62140	AT2G18960.1	12182706
AT2G18960.1	CDY62141	AT2G18960.1	12182706
AT2G18960.1	CDY64741	AT2G18960.1	12182706
AT2G18960.1	CDX89242	AT4G27500.1	12182706
AT2G18960.1	CDX97389	AT4G27500.1	12182706
AT2G18960.1	CDY14276	AT4G27500.1	12182706
AT2G18960.1	CDY19058	AT4G27500.1	12182706
AT2G18960.1	CDY29843	AT4G27500.1	12182706
AT2G18960.1	CDY56314	AT4G27500.1	12182706
AT2G18960.1	CDY56315	AT4G27500.1	12182706
AT2G18960.1	CDX89242	AT4G27500.1	16279950
AT2G18960.1	CDX97389	AT4G27500.1	16279950
AT2G18960.1	CDY14276	AT4G27500.1	16279950
AT2G18960.1	CDY19058	AT4G27500.1	16279950
AT2G18960.1	CDY29843	AT4G27500.1	16279950
AT2G18960.1	CDY56314	AT4G27500.1	16279950
AT2G18960.1	CDY56315	AT4G27500.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45897	Canola	extracellular	22.22	60.87
CDY09517	Canola	cytosol, endoplasmic reticulum, plasma membrane	30.95	39.59
CDY35173	Canola	cytosol	48.81	38.32
CDX96220	Canola	endoplasmic reticulum, nucleus, plasma membrane	33.33	37.84
CDY62141	Canola	cytosol, endoplasmic reticulum, plasma membrane	33.33	37.0
CDY39222	Canola	plasma membrane	33.73	36.64
CDX91747	Canola	plasma membrane	29.37	34.91
CDY08915	Canola	plasma membrane	38.1	33.92
CDY28277	Canola	cytosol	13.49	31.48
CDX76840	Canola	plasma membrane	15.48	28.47
CDY03545	Canola	plastid	71.03	27.12
CDX82608	Canola	peroxisome	81.75	21.71
Bra038835.1-P	Field mustard	cytosol, peroxisome, plasma membrane	81.35	21.6
CDY64741	Canola	peroxisome	80.56	21.39
CDY30294	Canola	peroxisome	80.56	21.39
AT2G18960.1	Thale cress	peroxisome	79.76	21.18
CDY14186	Canola	plasma membrane	73.81	19.81
CDY13569	Canola	cytosol	6.75	19.77
CDY28167	Canola	peroxisome	74.21	19.73
CDY30730	Canola	plasma membrane	60.32	19.31
CDX87330	Canola	plasma membrane	65.87	19.28
CDY39956	Canola	plasma membrane	65.87	19.28
CDY67153	Canola	peroxisome	69.44	19.06
CDY56511	Canola	peroxisome	66.67	18.73
CDX67957	Canola	peroxisome	65.48	18.44
PGSC0003DMT400010497	Potato	cytosol, peroxisome, plasma membrane	69.05	18.28
CDY34800	Canola	endoplasmic reticulum, plasma membrane, plastid	7.14	18.18
CDX76810	Canola	plasma membrane	60.32	17.8
EES11577	Sorghum	cytosol, peroxisome, plasma membrane	66.27	17.56
CDX79363	Canola	plasma membrane	59.92	17.48
CDY51651	Canola	plasma membrane	62.3	17.46
CDY51650	Canola	plasma membrane	62.3	17.25
CDY47940	Canola	peroxisome	65.08	17.25
Os04t0656100-01	Rice	plasma membrane	65.08	17.25
TraesCS2B01G530500.1	Wheat	peroxisome	65.08	17.25
TraesCS2D01G503000.1	Wheat	golgi, plastid, unclear	65.08	17.25
CDY42259	Canola	peroxisome	65.08	17.25
CDX72218	Canola	peroxisome	62.3	17.23
CDY25913	Canola	peroxisome	65.08	17.23
CDY38294	Canola	peroxisome	65.08	17.23
CDX72217	Canola	peroxisome	61.11	16.92
TraesCS2A01G502400.1	Wheat	golgi	63.49	16.82
CDX93092	Canola	peroxisome	62.3	16.54
CDY50939	Canola	peroxisome	61.9	16.44
CDY34767	Canola	peroxisome	61.51	16.21
HORVU2Hr1G111640.2	Barley	plasma membrane	64.29	16.04
CDY45757	Canola	peroxisome	61.11	16.01
CDX96779	Canola	plasma membrane	55.95	14.94
CDY42692	Canola	peroxisome	55.56	14.93
CDX83917	Canola	plasma membrane	55.56	14.83
CDY56993	Canola	peroxisome	55.56	14.78
CDY41176	Canola	peroxisome	55.56	14.57
CDX71820	Canola	peroxisome	55.56	14.57
CDY33128	Canola	plastid	8.73	9.95
CDY62140	Canola	peroxisome	26.98	9.91
CDX98252	Canola	nucleus	2.78	8.86
CDY24136	Canola	mitochondrion	3.97	4.24
CDX76809	Canola	cytosol, nucleus, peroxisome	1.98	3.27
CDY09377	Canola	endoplasmic reticulum, plasma membrane, vacuole	2.78	3.14
CDY45679	Canola	cytosol, golgi, plastid	2.78	3.11
CDY69631	Canola	cytosol, peroxisome, plasma membrane	5.56	2.67
CDY26756	Canola	mitochondrion	2.38	2.59
CDY67606	Canola	peroxisome	2.38	1.18
CDY50206	Canola	endoplasmic reticulum	0.79	0.95
CDY31231	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY14177	EnsemblPlantsGene:GSBRNA2T00078732001	Gene3D:1.20.1110.10	GO:A0A078FML8	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:ATPase_P-typ_TM_dom_sf	PANTHER:PTHR42861	PANTHER:PTHR42861:SF19	ProteinID:CDY14177	ProteinID:CDY14177.1
SEG:seg	SUPFAM:SSF81665	TMHMM:TMhelix	UniParc:UPI0004EE7ADF	UniProt:A0A078FML8	MapMan:35.1

Description

BnaC02g02940DBnaC02g02940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FML8]

Coordinates

chrLK032040:+:803023..804447

Molecular Weight (calculated)

28573.8 Da

IEP (calculated)

9.536

GRAVY (calculated)

0.121

Length

252 amino acids

Sequence
(BLAST)

001: MATYMLFLTC GLITFPDDQL AIGKETGRRL GMRTSMYPSA ALLGTVKDSN IASIPVEELI EKADGFAGVF PAIFQRMKNY TRMKNYTVRI ISYGIDCCYL
101: LGTIMTISKD RVKPSPTPDS WKLKEIFATG IVLGGYQAVM SVVFFWSIHK TDFFSDKFGV RSIRDNNDEL MGDVYLQVSI ISQAPSSSRV YADWTFAKVK
201: GIGWGWAGVI WVYSIVTYFP QDLLKFAIRY ILSGKAWISF FDNRVHRTNS LW

Best Arabidopsis Sequence Match ( AT2G18960.1 )
(BLAST)

001: MSGLEDIKNE TVDLEKIPIE EVFQQLKCTR EGLTTQEGED RIVIFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAALMA IALANGDNRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TSIGNFCICS IAIGIAIEIV VMYPIQHRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRVEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDSDGNWHR VSKGAPEQIL DLANARPDLR KKVLSCIDKY AERGLRSLAV ARQVVPEKTK ESPGGPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSAALLGT DKDSNIASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLKEIF ATGIVLGGYQ AIMSVIFFWA AHKTDFFSDK FGVRSIRDNN DELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FVIAQLVATL
801: IAVYADWTFA KVKGIGWGWA GVIWIYSIVT YFPQDILKFA IRYILSGKAW ASLFDNRTAF TTKKDYGIGE REAQWAQAQR TLHGLQPKED VNIFPEKGSY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVAKLKGLDI DTAGHHYTV

Arabidopsis Description

AHA1Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VSN5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.