CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96220	Canola	endoplasmic reticulum, nucleus, plasma membrane	84.48	88.29
CDY09517	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.26	82.74
CDY62141	Canola	cytosol, endoplasmic reticulum, plasma membrane	80.17	81.94
CDY34800	Canola	endoplasmic reticulum, plasma membrane, plastid	24.14	56.57
CDY35173	Canola	cytosol	66.38	47.98
CDY14177	Canola	extracellular	36.64	33.73
CDX76840	Canola	plasma membrane	18.53	31.39
CDY08915	Canola	plasma membrane	35.78	29.33
CDX91747	Canola	plasma membrane	24.14	26.42
CDY03545	Canola	plastid	64.66	22.73
CDY30294	Canola	peroxisome	71.12	17.39
CDY64741	Canola	peroxisome	71.12	17.39
CDX82608	Canola	peroxisome	70.69	17.28
CDY28167	Canola	peroxisome	65.95	16.14
CDY14186	Canola	plasma membrane	65.09	16.08
TraesCS4A01G247800.1	Wheat	plastid	21.98	15.74
CDY30730	Canola	plasma membrane	53.02	15.63
CDY45897	Canola	extracellular	6.03	15.22
CDY39956	Canola	plasma membrane	54.74	14.75
CDY56511	Canola	peroxisome	56.9	14.72
CDX76810	Canola	plasma membrane	53.88	14.64
CDX87330	Canola	plasma membrane	54.31	14.63
CDX67957	Canola	peroxisome	54.74	14.19
CDY47940	Canola	peroxisome	55.6	13.56
CDY42259	Canola	peroxisome	55.6	13.56
CDY25913	Canola	peroxisome	55.6	13.55
CDY38294	Canola	peroxisome	55.6	13.55
CDY67153	Canola	peroxisome	53.45	13.51
CDY50939	Canola	peroxisome	53.88	13.17
CDX93092	Canola	peroxisome	53.88	13.17
CDX79363	Canola	plasma membrane	48.71	13.08
CDY34767	Canola	peroxisome	53.45	12.97
CDY45757	Canola	peroxisome	52.59	12.68
CDX98252	Canola	nucleus	4.31	12.66
CDY51650	Canola	plasma membrane	49.57	12.64
CDY51651	Canola	plasma membrane	48.71	12.57
CDX72217	Canola	peroxisome	49.14	12.53
CDX72218	Canola	peroxisome	48.71	12.4
CDX71820	Canola	peroxisome	46.12	11.13
CDY41176	Canola	peroxisome	45.69	11.03
CDX83917	Canola	plasma membrane	42.24	10.38
CDX96779	Canola	plasma membrane	42.24	10.38
CDY56993	Canola	peroxisome	42.24	10.35
CDY42692	Canola	peroxisome	41.38	10.23
CDY13569	Canola	cytosol	1.72	4.65
CDY28277	Canola	cytosol	1.72	3.7
CDY33128	Canola	plastid	1.72	1.81
CDX76809	Canola	cytosol, nucleus, peroxisome	0.86	1.31
CDY62140	Canola	peroxisome	0.43	0.15
Zm00001d029535_P001	Maize	cytosol, plasma membrane, plastid	0.0	0.0
CDY69631	Canola	cytosol, peroxisome, plasma membrane	0.0	0.0
CDY67606	Canola	peroxisome	0.0	0.0
CDY09377	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.0	0.0
CDY24136	Canola	mitochondrion	0.0	0.0
CDY26756	Canola	mitochondrion	0.0	0.0
CDY50206	Canola	endoplasmic reticulum	0.0	0.0
CDY31231	Canola	plastid	0.0	0.0
CDY45679	Canola	cytosol, golgi, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY39222	EnsemblPlantsGene:GSBRNA2T00067442001	Gene3D:1.20.1110.10	GO:A0A078HMX2	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:ATPase_P-typ_TM_dom_sf	ncoils:Coil	PANTHER:PTHR42861	PANTHER:PTHR42861:SF19	ProteinID:CDY39222
ProteinID:CDY39222.1	SUPFAM:SSF81665	TMHMM:TMhelix	UniParc:UPI0004EEB5F2	UniProt:A0A078HMX2	MapMan:35.1

Description

BnaA03g50340DBnaA03g50340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMX2]

Coordinates

chrLK032443:-:232034..233214

Molecular Weight (calculated)

27164.2 Da

IEP (calculated)

10.339

GRAVY (calculated)

0.068

Length

232 amino acids

Sequence
(BLAST)

001: MSVIFFWVIH KTDFCSFGVR SIRDNNDELM FAVYLQVSII SQALIFVTRS RSWSFVERPG ALLMIAFVIA QLIATLIAVY ANWTFAKVKG IGWGWAAVIW
101: VYSILTYIPQ EILKFAIRYI LSGKAWVSMF DKRSALTTRR DYGAGERQAE WAREQRTQHG LQTRQEVNVF PENEGYRKLS QIVEQAKKRA EIARALHLPL
201: KKQGFCVKSI YIYFKLFMQL NWFSKNYQFN IE

Best Arabidopsis Sequence Match ( AT2G18960.1 )
(BLAST)

001: MSGLEDIKNE TVDLEKIPIE EVFQQLKCTR EGLTTQEGED RIVIFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAALMA IALANGDNRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TSIGNFCICS IAIGIAIEIV VMYPIQHRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRVEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDSDGNWHR VSKGAPEQIL DLANARPDLR KKVLSCIDKY AERGLRSLAV ARQVVPEKTK ESPGGPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSAALLGT DKDSNIASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLKEIF ATGIVLGGYQ AIMSVIFFWA AHKTDFFSDK FGVRSIRDNN DELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FVIAQLVATL
801: IAVYADWTFA KVKGIGWGWA GVIWIYSIVT YFPQDILKFA IRYILSGKAW ASLFDNRTAF TTKKDYGIGE REAQWAQAQR TLHGLQPKED VNIFPEKGSY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVAKLKGLDI DTAGHHYTV

Arabidopsis Description

AHA1Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VSN5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.