CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plasma membrane
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82608
CDX89242
CDX97389
CDY14177
CDY14276
CDY19058
CDY29843
CDY30294
CDY45897
CDY56314
CDY56315
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18960.1	CDX82608	AT2G18960.1	12182706
AT2G18960.1	CDY14177	AT2G18960.1	12182706
AT2G18960.1	CDY30294	AT2G18960.1	12182706
AT2G18960.1	CDY45897	AT2G18960.1	12182706
AT2G18960.1	CDY56511	AT2G18960.1	12182706
AT2G18960.1	CDY62140	AT2G18960.1	12182706
AT2G18960.1	CDY62141	AT2G18960.1	12182706
AT2G18960.1	CDY64741	AT2G18960.1	12182706
AT2G18960.1	CDX89242	AT4G27500.1	12182706
AT2G18960.1	CDX97389	AT4G27500.1	12182706
AT2G18960.1	CDY14276	AT4G27500.1	12182706
AT2G18960.1	CDY19058	AT4G27500.1	12182706
AT2G18960.1	CDY29843	AT4G27500.1	12182706
AT2G18960.1	CDY56314	AT4G27500.1	12182706
AT2G18960.1	CDY56315	AT4G27500.1	12182706
AT2G18960.1	CDX89242	AT4G27500.1	16279950
AT2G18960.1	CDX97389	AT4G27500.1	16279950
AT2G18960.1	CDY14276	AT4G27500.1	16279950
AT2G18960.1	CDY19058	AT4G27500.1	16279950
AT2G18960.1	CDY29843	AT4G27500.1	16279950
AT2G18960.1	CDY56314	AT4G27500.1	16279950
AT2G18960.1	CDY56315	AT4G27500.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038835.1-P	Field mustard	cytosol, peroxisome, plasma membrane	99.68	99.68
CDY30294	Canola	peroxisome	99.26	99.26
CDY64741	Canola	peroxisome	99.16	99.16
AT2G18960.1	Thale cress	peroxisome	97.89	97.89
CDY14186	Canola	plasma membrane	93.15	94.14
CDY28167	Canola	peroxisome	93.36	93.46
CDY67153	Canola	peroxisome	90.2	93.25
CDY03545	Canola	plastid	64.59	92.88
CDY51650	Canola	plasma membrane	87.36	91.1
CDX72218	Canola	peroxisome	87.25	90.89
CDX72217	Canola	peroxisome	87.04	90.77
CDY51651	Canola	plasma membrane	85.99	90.77
CDY56511	Canola	peroxisome	83.67	88.52
PGSC0003DMT400010497	Potato	cytosol, peroxisome, plasma membrane	88.72	88.45
CDY62140	Canola	peroxisome	63.65	88.05
CDX91747	Canola	plasma membrane	19.6	87.74
CDY47940	Canola	peroxisome	87.25	87.07
CDY42259	Canola	peroxisome	87.25	87.07
CDY45897	Canola	extracellular	8.43	86.96
CDY25913	Canola	peroxisome	87.14	86.87
CDY38294	Canola	peroxisome	86.83	86.55
EES11577	Sorghum	cytosol, peroxisome, plasma membrane	86.2	86.01
Os04t0656100-01	Rice	plasma membrane	85.14	84.96
TraesCS2D01G503000.1	Wheat	golgi, plastid, unclear	84.19	84.02
TraesCS2B01G530500.1	Wheat	peroxisome	84.19	84.02
CDY62141	Canola	cytosol, endoplasmic reticulum, plasma membrane	20.02	83.7
TraesCS2A01G502400.1	Wheat	golgi	83.77	83.6
CDY09517	Canola	cytosol, endoplasmic reticulum, plasma membrane	17.28	83.25
CDY39956	Canola	plasma membrane	74.71	82.35
CDX87330	Canola	plasma membrane	74.5	82.11
CDY14177	Canola	extracellular	21.71	81.75
CDY69631	Canola	cytosol, peroxisome, plasma membrane	45.1	81.68
CDX93092	Canola	peroxisome	81.45	81.45
CDY50939	Canola	peroxisome	81.35	81.35
CDY67606	Canola	peroxisome	43.31	81.07
CDX79363	Canola	plasma membrane	73.55	80.79
CDX67957	Canola	peroxisome	75.66	80.22
CDY45757	Canola	peroxisome	80.72	79.63
CDY34767	Canola	peroxisome	79.77	79.18
HORVU2Hr1G111640.2	Barley	plasma membrane	83.88	78.81
CDY30730	Canola	plasma membrane	64.59	77.89
CDX76810	Canola	plasma membrane	69.55	77.28
CDX96220	Canola	endoplasmic reticulum, nucleus, plasma membrane	17.18	73.42
CDY41176	Canola	peroxisome	73.66	72.74
CDX71820	Canola	peroxisome	73.45	72.53
CDY56993	Canola	peroxisome	71.97	72.12
CDY42692	Canola	peroxisome	71.23	72.07
CDX76809	Canola	cytosol, nucleus, peroxisome	11.49	71.24
CDX96779	Canola	plasma membrane	70.5	70.87
CDX83917	Canola	plasma membrane	70.39	70.76
CDY39222	Canola	plasma membrane	17.28	70.69
CDY34800	Canola	endoplasmic reticulum, plasma membrane, plastid	6.85	65.66
CDY35173	Canola	cytosol	21.92	64.8
CDY08915	Canola	plasma membrane	18.55	62.19
CDX76840	Canola	plasma membrane	7.59	52.55
CDY28277	Canola	cytosol	5.27	46.3
CDX98252	Canola	nucleus	3.48	41.77
CDY24136	Canola	mitochondrion	9.48	38.14
CDY45679	Canola	cytosol, golgi, plastid	8.75	36.89
CDY09377	Canola	endoplasmic reticulum, plasma membrane, vacuole	8.64	36.77
CDY13569	Canola	cytosol	3.06	33.72
CDY26756	Canola	mitochondrion	7.06	28.88
CDY33128	Canola	plastid	6.43	27.6
CDY31231	Canola	plastid	5.58	26.77
CDY50206	Canola	endoplasmic reticulum	4.74	21.43

Protein Annotations

KEGG:00190+3.6.3.6	Gene3D:1.20.1110.10	MapMan:24.1.2.3.1	Gene3D:3.40.1110.10	GO:A0A078D5U5	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlants:CDX82608	ProteinID:CDX82608
ProteinID:CDX82608.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0008553	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0120029	EnsemblPlantsGene:GSBRNA2T00137797001	InterPro:HAD-like_sf	InterPro:IPR023299
InterPro:P-type_ATPase_IIIA	PFAM:PF00122	PFAM:PF00690	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120
ScanProsite:PS00154	PANTHER:PTHR42861	PANTHER:PTHR42861:SF19	InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784
SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01647	TMHMM:TMhelix	UniParc:UPI0004EE0C13
SEG:seg	:	:	:	:	:

Description

BnaC07g02580D

Coordinates

chrLK031829:+:326930..332761

Molecular Weight (calculated)

104327.0 Da

IEP (calculated)

6.729

GRAVY (calculated)

0.069

Length

949 amino acids

Sequence
(BLAST)

001: MSGLEDIKNE TVDLEKIPIE EVFQQLKCTR EGLTTQEGEE RIQLFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAAIMA IALANGDGRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TSIGNFCICS IAIGIVIEII VMYPIQRRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRIEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDSDGNWHR VSKGAPEQIL DLANARPDLR KKVFGCMDKY AERGLRSLAV ARQVVPEKTK ESPGGPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSAALLGT DKDSNIASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLKEIF ATGIVLGGYQ AVMSVVFFWA IHKTDFFSDK FGVRSIRDNN DELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FVIAQLVATL
801: IAVYADWTFA KVKGIGWGWA GVIWVYSIVT YFPQDLLKFA IRYILSGKAW TSLFDNRTAF TTKKDYGIGE REAQWAQAQR TLHGLQPKEE VNIFPEKGGY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVAKLKGLDI DTAGHHYTV

Best Arabidopsis Sequence Match ( AT2G18960.1 )
(BLAST)

001: MSGLEDIKNE TVDLEKIPIE EVFQQLKCTR EGLTTQEGED RIVIFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAALMA IALANGDNRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TSIGNFCICS IAIGIAIEIV VMYPIQHRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRVEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDSDGNWHR VSKGAPEQIL DLANARPDLR KKVLSCIDKY AERGLRSLAV ARQVVPEKTK ESPGGPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSAALLGT DKDSNIASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLKEIF ATGIVLGGYQ AIMSVIFFWA AHKTDFFSDK FGVRSIRDNN DELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FVIAQLVATL
801: IAVYADWTFA KVKGIGWGWA GVIWIYSIVT YFPQDILKFA IRYILSGKAW ASLFDNRTAF TTKKDYGIGE REAQWAQAQR TLHGLQPKED VNIFPEKGSY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVAKLKGLDI DTAGHHYTV

Arabidopsis Description

AHA1Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VSN5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.