CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82608
CDY14177
CDY30294
CDY45897
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	CDX82608	AT2G18960.1	12182706
AT4G27500.1	CDY14177	AT2G18960.1	12182706
AT4G27500.1	CDY30294	AT2G18960.1	12182706
AT4G27500.1	CDY45897	AT2G18960.1	12182706
AT4G27500.1	CDY56511	AT2G18960.1	12182706
AT4G27500.1	CDY62140	AT2G18960.1	12182706
AT4G27500.1	CDY62141	AT2G18960.1	12182706
AT4G27500.1	CDY64741	AT2G18960.1	12182706
AT4G27500.1	CDX82608	AT2G18960.1	16279950
AT4G27500.1	CDY14177	AT2G18960.1	16279950
AT4G27500.1	CDY30294	AT2G18960.1	16279950
AT4G27500.1	CDY45897	AT2G18960.1	16279950
AT4G27500.1	CDY56511	AT2G18960.1	16279950
AT4G27500.1	CDY62140	AT2G18960.1	16279950
AT4G27500.1	CDY62141	AT2G18960.1	16279950
AT4G27500.1	CDY64741	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89242	Canola	cytoskeleton, cytosol, nucleus	68.17	73.89
CDY29843	Canola	nucleus	85.38	66.17
CDX97389	Canola	nucleus	71.83	54.22
CDY14276	Canola	nucleus	71.61	53.54
AT4G27500.1	Thale cress	nucleus	70.11	53.27
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	66.88	51.07
GSMUA_Achr6P21610_001	Banana	cytosol	41.94	45.67
Solyc12g013860.1.1	Tomato	unclear	31.18	43.67
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	30.54	41.64
EER96609	Sorghum	cytosol	27.96	40.75
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	48.17	39.58
KRH27251	Soybean	endoplasmic reticulum, nucleus	46.02	35.43
KRH22077	Soybean	endoplasmic reticulum	46.88	35.39
KRH55252	Soybean	nucleus	47.53	33.23
HORVU4Hr1G058930.1	Barley	nucleus	39.35	33.09
PGSC0003DMT400032400	Potato	nucleus	44.73	33.07
Solyc07g063100.2.1	Tomato	nucleus	44.52	32.96
HORVU5Hr1G041880.1	Barley	nucleus	42.58	31.83
TraesCS5A01G186800.1	Wheat	nucleus	41.72	31.29
EER96610	Sorghum	nucleus	41.51	31.28
Zm00001d005636_P001	Maize	nucleus	41.51	31.28
TraesCS5B01G185200.2	Wheat	nucleus	41.51	30.63
TraesCS5D01G192100.1	Wheat	nucleus	41.72	30.41
Os09t0346400-01	Rice	golgi, plasma membrane	40.22	29.82
Zm00001d020175_P002	Maize	golgi, plasma membrane	41.29	29.81
HORVU0Hr1G030120.1	Barley	nucleus, plastid	42.58	29.42
Os08t0390000-02	Rice	nucleus	38.71	28.99
CDX98546	Canola	nucleus	27.96	23.01
CDX75821	Canola	nucleus	29.89	22.79
CDX82440	Canola	nucleus	29.89	22.53
CDX97649	Canola	nucleus	26.67	22.42
CDY24116	Canola	nucleus	18.06	21.11
CDY26009	Canola	nucleus	17.63	20.5
CDY56315	Canola	nucleus	3.66	16.04
CDY04588	Canola	nucleus	20.43	6.94
CDY29491	Canola	nucleus	20.0	6.74

Protein Annotations

EnsemblPlants:CDY56314	EnsemblPlantsGene:GSBRNA2T00019426001	GO:A0A078IWY9	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155
GO:GO:0016020	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	ProteinID:CDY56314
ProteinID:CDY56314.1	SEG:seg	UniParc:UPI0004EDF70D	UniProt:A0A078IWY9	MapMan:35.1	:

Description

BnaC07g50300DBnaC07g50300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWY9]

Coordinates

chrLK033478:+:4475..6652

Molecular Weight (calculated)

53093.5 Da

IEP (calculated)

9.984

GRAVY (calculated)

-0.954

Length

465 amino acids

Sequence
(BLAST)

001: MGVEFVKSGG FEVAPAPFEG KPETNGKVVD KVAIKKAEES PNNNNNNNVL ISDVPKDAAE EWPAAKQIRS FYFVKYRHFD DPKIKAKLDV ADKELEKLSK
101: ARSAVYEQLK AKRAERSELF DLLDPLKTER QGYNTKFDEK RKEMEPLQQA LGKLRGNDGG NARGPAICSS EEELNNMIYS YQYRIQHESI PLTEEKQLLK
201: EIRLLEGTRD KVIANEAVRA KIKESMGQKD DIQGQVKLMG AGLDGVKKER QAISARINQL SEKVKAAKDE IQVLENELKT VTEKRDKAYS NIRELRKQRD
301: ENNSGFYQGR VVLNKARDLA AQKNIEELEA LSNAEVEKFI SLWCSKKNFR EDYEKRLLPS LDARQLSRDG RMRNPEEKPL IAPPEAPPQA KAVTEVVPKA
401: KAKQQQQQPK EEPVSAPKPD APAVQKKAKD AAKVKNVVVA DEEEEMRKCM VLESRRRRRR WMKRR

Best Arabidopsis Sequence Match ( AT4G27500.2 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEITFS FLLYLNALCI LLSPF

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.