Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G111640.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27500.1 | HORVU2Hr1G111640.2 | AT2G18960.1 | 12182706 |
| AT4G27500.1 | HORVU2Hr1G111640.2 | AT2G18960.1 | 16279950 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G081330.1 | Barley | cytosol, nucleus | 54.43 | 88.27 |
| HORVU5Hr1G041880.1 | Barley | nucleus | 91.32 | 81.19 |
| TraesCS5A01G186800.1 | Wheat | nucleus | 84.45 | 75.32 |
| HORVU0Hr1G030120.1 | Barley | nucleus, plastid | 91.32 | 75.04 |
| TraesCS5B01G185200.2 | Wheat | nucleus | 85.17 | 74.76 |
| TraesCS5D01G192100.1 | Wheat | nucleus | 86.08 | 74.61 |
| EER96610 | Sorghum | nucleus | 68.17 | 61.1 |
| Zm00001d005636_P001 | Maize | nucleus | 66.0 | 59.16 |
| Zm00001d020175_P002 | Maize | golgi, plasma membrane | 67.81 | 58.23 |
| EER96609 | Sorghum | cytosol | 33.45 | 57.99 |
| Os09t0346400-01 | Rice | golgi, plasma membrane | 64.38 | 56.78 |
| GSMUA_Achr6P21610_001 | Banana | cytosol | 34.0 | 44.03 |
| VIT_19s0014g02640.t01 | Wine grape | extracellular, nucleus | 40.51 | 39.58 |
| CDY56314 | Canola | nucleus | 33.09 | 39.35 |
| CDX89242 | Canola | cytoskeleton, cytosol, nucleus | 29.66 | 38.23 |
| KRH27251 | Soybean | endoplasmic reticulum, nucleus | 41.59 | 38.08 |
| CDY29843 | Canola | nucleus | 40.87 | 37.67 |
| Bra019045.1-P | Field mustard | nucleus | 41.05 | 37.52 |
| KRH22077 | Soybean | endoplasmic reticulum | 40.69 | 36.53 |
| Solyc12g013860.1.1 | Tomato | unclear | 21.88 | 36.45 |
| CDX97389 | Canola | nucleus | 39.6 | 35.55 |
| AT4G27500.1 | Thale cress | nucleus | 39.24 | 35.46 |
| PGSC0003DMT400032400 | Potato | nucleus | 40.33 | 35.45 |
| Solyc07g063100.2.1 | Tomato | nucleus | 39.24 | 34.55 |
| CDY14276 | Canola | nucleus | 38.16 | 33.92 |
| KRH55252 | Soybean | nucleus | 40.69 | 33.83 |
| CDY19058 | Canola | endoplasmic reticulum, nucleus, plastid | 36.71 | 33.33 |
| Bra026343.1-P | Field mustard | nucleus | 37.97 | 33.12 |
| Bra010401.1-P | Field mustard | nucleus | 38.52 | 28.51 |
| CDY24116 | Canola | nucleus | 19.89 | 27.64 |
| Bra019016.1-P | Field mustard | nucleus | 19.53 | 27.2 |
| CDY26009 | Canola | nucleus | 19.35 | 26.75 |
| Bra001590.1-P | Field mustard | nucleus | 28.39 | 26.52 |
| AT3G15340.3 | Thale cress | nucleus | 26.76 | 25.13 |
| AT1G53110.1 | Thale cress | nucleus | 19.53 | 24.6 |
| AT5G36780.1 | Thale cress | nucleus | 24.77 | 23.78 |
| AT5G36690.1 | Thale cress | nucleus | 24.77 | 23.78 |
| CDX75821 | Canola | nucleus | 26.04 | 23.61 |
| CDX82440 | Canola | nucleus | 26.04 | 23.34 |
| Bra027261.1-P | Field mustard | nucleus | 23.69 | 23.14 |
| CDX98546 | Canola | nucleus | 23.15 | 22.65 |
| CDX97649 | Canola | nucleus | 22.6 | 22.6 |
| CDY56315 | Canola | nucleus | 2.89 | 15.09 |
| HORVU5Hr1G073990.1 | Barley | mitochondrion | 22.97 | 11.99 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G058930.1 | EnsemblPlantsGene:HORVU4Hr1G058930 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010155 | GO:GO:0016020 |
| InterPro:PPI | ncoils:Coil | PANTHER:PTHR32219 | PANTHER:PTHR32219:SF2 | SEG:seg | UniParc:UPI000B471B75 |
| UniProt:A0A287P7T4 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:491727790..491738565
Molecular Weight (calculated)
62902.0 Da
IEP (calculated)
8.868
GRAVY (calculated)
-1.058
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: PRLFLPEPRS ARRVALQVAD EEVALFQDKE SQATAREREE ASAFGSDNGK AAANAPNGSD MAPPKHAADE WPEPKQTYTF YFVKVRSFED PKLRAKLEQA
101: EKDFQNKIQA RSKIIEAIKA KKTERAPVLA ELRPLSAENT QYNEAFNEKL EEMKPFRNRL GKFRDENNAM RAESARLCSS LEELEHEIKR LNHCISHERI
201: SLDEEKRLIK EIKTLEKTRP KVSSNAAKRA KMQDTVVERD AIQDQVKIIG DGIDGVKKER QAVRSKIKVL DDEMKVVDGE IASLQEDLNA ATATKDKAYE
301: SLTELRKLRD LANASFHQNR IVLNKARDYS SRNEVEELQE LHKTEVDKFM TQWCSSKTFR EDYEKRILTS LNGRQLTRDG RTRNPHEKPI FTETQQLVAQ
401: EPVPSKAPLK QAKEAAAPQV VAPKEEPLAK ASAKSAKVNA YVDADDDAYE AEEEKPKPKE VDVAKLKEIK RQEEIKKNKL ALERKKKQAE KQAAKAAARA
501: QKEAEKKLKK EEKKTKKKTE PADTDEPTDS DTKSDEATEA QAEDEFTPTT LNK
101: EKDFQNKIQA RSKIIEAIKA KKTERAPVLA ELRPLSAENT QYNEAFNEKL EEMKPFRNRL GKFRDENNAM RAESARLCSS LEELEHEIKR LNHCISHERI
201: SLDEEKRLIK EIKTLEKTRP KVSSNAAKRA KMQDTVVERD AIQDQVKIIG DGIDGVKKER QAVRSKIKVL DDEMKVVDGE IASLQEDLNA ATATKDKAYE
301: SLTELRKLRD LANASFHQNR IVLNKARDYS SRNEVEELQE LHKTEVDKFM TQWCSSKTFR EDYEKRILTS LNGRQLTRDG RTRNPHEKPI FTETQQLVAQ
401: EPVPSKAPLK QAKEAAAPQV VAPKEEPLAK ASAKSAKVNA YVDADDDAYE AEEEKPKPKE VDVAKLKEIK RQEEIKKNKL ALERKKKQAE KQAAKAAARA
501: QKEAEKKLKK EEKKTKKKTE PADTDEPTDS DTKSDEATEA QAEDEFTPTT LNK
001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL
Arabidopsis Description
PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.