Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019016.1-P | Field mustard | nucleus | 95.73 | 95.97 |
| CDY26009 | Canola | nucleus | 82.66 | 82.25 |
| AT1G53110.1 | Thale cress | nucleus | 55.28 | 50.11 |
| CDX97649 | Canola | nucleus | 42.46 | 30.56 |
| CDX98546 | Canola | nucleus | 42.71 | 30.09 |
| CDX82440 | Canola | nucleus | 42.71 | 27.55 |
| CDX75821 | Canola | nucleus | 42.21 | 27.54 |
| KRH22077 | Soybean | endoplasmic reticulum | 36.18 | 23.38 |
| CDY29843 | Canola | nucleus | 35.18 | 23.33 |
| KRH27251 | Soybean | endoplasmic reticulum, nucleus | 35.18 | 23.18 |
| CDX97389 | Canola | nucleus | 35.18 | 22.73 |
| CDY14276 | Canola | nucleus | 34.92 | 22.35 |
| VIT_19s0014g02640.t01 | Wine grape | extracellular, nucleus | 31.16 | 21.91 |
| Solyc07g063100.2.1 | Tomato | nucleus | 34.17 | 21.66 |
| PGSC0003DMT400032400 | Potato | nucleus | 33.92 | 21.46 |
| KRH55252 | Soybean | nucleus | 34.92 | 20.9 |
| HORVU5Hr1G041880.1 | Barley | nucleus | 32.41 | 20.74 |
| EER96610 | Sorghum | nucleus | 31.91 | 20.58 |
| TraesCS5A01G186800.1 | Wheat | nucleus | 31.41 | 20.16 |
| TraesCS5B01G185200.2 | Wheat | nucleus | 31.91 | 20.16 |
| Zm00001d005636_P001 | Maize | nucleus | 31.16 | 20.1 |
| HORVU4Hr1G058930.1 | Barley | nucleus | 27.64 | 19.89 |
| Os09t0346400-01 | Rice | golgi, plasma membrane | 31.16 | 19.78 |
| TraesCS5D01G192100.1 | Wheat | nucleus | 31.66 | 19.75 |
| Zm00001d020175_P002 | Maize | golgi, plasma membrane | 31.41 | 19.41 |
| CDY19058 | Canola | endoplasmic reticulum, nucleus, plastid | 29.65 | 19.38 |
| HORVU0Hr1G030120.1 | Barley | nucleus, plastid | 32.41 | 19.17 |
| Os08t0390000-02 | Rice | nucleus | 29.65 | 19.0 |
| CDX89242 | Canola | cytoskeleton, cytosol, nucleus | 20.1 | 18.65 |
| CDY56314 | Canola | nucleus | 21.11 | 18.06 |
| CDY56315 | Canola | nucleus | 4.77 | 17.92 |
| GSMUA_Achr6P21610_001 | Banana | cytosol | 18.34 | 17.1 |
| EER96609 | Sorghum | cytosol | 13.57 | 16.93 |
| HORVU2Hr1G081330.1 | Barley | cytosol, nucleus | 13.82 | 16.13 |
| Solyc12g013860.1.1 | Tomato | unclear | 9.8 | 11.75 |
| CDY29491 | Canola | nucleus | 20.85 | 6.01 |
| CDY04588 | Canola | nucleus | 20.6 | 5.99 |
Protein Annotations
| MapMan:35.1 | GO:A0A078GFH2 | UniProt:A0A078GFH2 | EnsemblPlants:CDY24116 | ProteinID:CDY24116 | ProteinID:CDY24116.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010155 | GO:GO:0016020 | GO:GO:0016021 |
| EnsemblPlantsGene:GSBRNA2T00024667001 | InterPro:PPI | PANTHER:PTHR32219 | PANTHER:PTHR32219:SF2 | TMHMM:TMhelix | UniParc:UPI0004EE1127 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g01140DBnaA06g01140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFH2]
Coordinates
chrLK032153:-:556073..558020
Molecular Weight (calculated)
46800.3 Da
IEP (calculated)
6.703
GRAVY (calculated)
-0.984
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSPVSLCNG GLDARRLVIG DLSSRETTEE EEDYAVFSGE EEEEEEEDGW REDRFCFYFV KQFAYDDPEI KAKIDEADNE IYNCNSERIH IANRLKAKRA
101: EKLSLMSSVD GYNVMSERLS EVEMEMELLD AQMGCVLDQR DRAFERIKLL RVQRDKGNAA FFQSRAVMKK AIELAACGNF RDLEELAYSE VDKFMSRWNN
201: DKAFRDDYKK RILPSLEERK VRRNEQIRSS ECDVDTENRD ETAVELKRFS TEEEEESDEE ALKEKRREEQ LEKAKLAMER KRKLHEKAAA KAARRAKKEA
301: EKKLKELEKR AKKKKDLERT PETVTEPSEP EKEKPLNGRS VSWNQRSLRY RHHHKKGNEN VPKAILKRRR AYRLWVWSVS SAALALPLAL FIVFFYVR
101: EKLSLMSSVD GYNVMSERLS EVEMEMELLD AQMGCVLDQR DRAFERIKLL RVQRDKGNAA FFQSRAVMKK AIELAACGNF RDLEELAYSE VDKFMSRWNN
201: DKAFRDDYKK RILPSLEERK VRRNEQIRSS ECDVDTENRD ETAVELKRFS TEEEEESDEE ALKEKRREEQ LEKAKLAMER KRKLHEKAAA KAARRAKKEA
301: EKKLKELEKR AKKKKDLERT PETVTEPSEP EKEKPLNGRS VSWNQRSLRY RHHHKKGNEN VPKAILKRRR AYRLWVWSVS SAALALPLAL FIVFFYVR
001: MSASILLCDG FDVRRILTGK LNGDESSTVT TEEDDEAVFS GEEWCGESSY CFYFVKQFAY DDPEIKAKID EADHEVYHCN TDRIHIANRL KSKRAARLSL
101: VASMETLMSM KINEVEKEQE VVRGRIYRLG ERLSEIKMEI ELLDVQMACV LNQRDKAVER IKFLRMQRDK GNAAFYQSRV VMKKAIELAA SGNVRDLEEL
201: ADSEVEKFMS RWNNDKAFRD NYKKRILPSV NERKLRCDVQ IRDLEGNLDT ENGNETVVKK AIEYKRFSTE EESDDFDIPV YEKLGKEEKE IDEETLKEKK
301: REEQLEKARL AMERKRKLHE KAAAKAVIRV KKEAEKKRKE LDKRAKKKKA VCKSSSVDVD RTTETVSEAS KPEKEKLLNG RSVFPKQRSY NYRYHGKGND
401: AVLKAIIKRR KAYRLWVWTV SSAAVALPLA LLVVFYYVR
101: VASMETLMSM KINEVEKEQE VVRGRIYRLG ERLSEIKMEI ELLDVQMACV LNQRDKAVER IKFLRMQRDK GNAAFYQSRV VMKKAIELAA SGNVRDLEEL
201: ADSEVEKFMS RWNNDKAFRD NYKKRILPSV NERKLRCDVQ IRDLEGNLDT ENGNETVVKK AIEYKRFSTE EESDDFDIPV YEKLGKEEKE IDEETLKEKK
301: REEQLEKARL AMERKRKLHE KAAAKAVIRV KKEAEKKRKE LDKRAKKKKA VCKSSSVDVD RTTETVSEAS KPEKEKLLNG RSVFPKQRSY NYRYHGKGND
401: AVLKAIIKRR KAYRLWVWTV SSAAVALPLA LLVVFYYVR
Arabidopsis Description
PPI4Proton pump-interactor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZN4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.