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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g011700.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G27500.1 Solyc02g011700.1.1 AT2G18960.1 12182706
AT4G27500.1 Solyc02g011700.1.1 AT2G18960.1 16279950
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX89242 Canola cytoskeleton, cytosol, nucleus 43.67 33.8
HORVU2Hr1G081330.1 Barley cytosol, nucleus 34.34 33.43
GSMUA_Achr6P21610_001 Banana cytosol 42.47 33.02
CDY56314 Canola nucleus 43.67 31.18
Solyc07g063100.2.1 Tomato nucleus 58.13 30.73
EER96609 Sorghum cytosol 27.41 28.53
VIT_19s0014g02640.t01 Wine grape extracellular, nucleus 46.69 27.39
KRH27251 Soybean endoplasmic reticulum, nucleus 47.89 26.32
KRH22077 Soybean endoplasmic reticulum 47.59 25.65
AT4G27500.1 Thale cress nucleus 45.78 24.84
CDY29843 Canola nucleus 43.67 24.17
Bra019045.1-P Field mustard nucleus 43.67 23.97
Bra026343.1-P Field mustard nucleus 44.28 23.19
CDY19058 Canola endoplasmic reticulum, nucleus, plastid 42.47 23.15
KRH55252 Soybean nucleus 44.88 22.41
CDX97389 Canola nucleus 40.96 22.08
HORVU4Hr1G058930.1 Barley nucleus 36.45 21.88
CDY14276 Canola nucleus 40.96 21.86
Os08t0390000-02 Rice nucleus 39.76 21.26
Zm00001d005636_P001 Maize nucleus 39.46 21.23
EER96610 Sorghum nucleus 39.16 21.07
Zm00001d020175_P002 Maize golgi, plasma membrane 38.86 20.03
Os09t0346400-01 Rice golgi, plasma membrane 37.65 19.94
HORVU5Hr1G041880.1 Barley nucleus 37.05 19.77
TraesCS5A01G186800.1 Wheat nucleus 36.14 19.35
TraesCS5B01G185200.2 Wheat nucleus 36.14 19.05
TraesCS5D01G192100.1 Wheat nucleus 36.14 18.81
Bra010401.1-P Field mustard nucleus 41.27 18.34
HORVU0Hr1G030120.1 Barley nucleus, plastid 37.05 18.28
AT3G15340.3 Thale cress nucleus 25.6 14.43
AT5G36690.1 Thale cress nucleus 24.7 14.24
AT5G36780.1 Thale cress nucleus 24.7 14.24
Bra001590.1-P Field mustard nucleus 23.49 13.18
CDX98546 Canola nucleus 21.69 12.74
CDX75821 Canola nucleus 23.19 12.62
CDX82440 Canola nucleus 22.89 12.32
CDX97649 Canola nucleus 19.58 11.75
CDY56315 Canola nucleus 3.61 11.32
Bra027261.1-P Field mustard nucleus 19.28 11.31
CDY26009 Canola nucleus 12.65 10.5
AT1G53110.1 Thale cress nucleus 13.55 10.25
Bra019016.1-P Field mustard nucleus 11.75 9.82
CDY24116 Canola nucleus 11.75 9.8
Solyc05g008780.2.1 Tomato nucleus 18.67 4.02
Protein Annotations
EnsemblPlants:Solyc12g013860.1.1EnsemblPlantsGene:Solyc12g013860.1Gene3D:1.20.5.340GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005886GO:GO:0006810GO:GO:0008150GO:GO:0010155
GO:GO:0016020InterPro:PPIncoils:CoilPANTHER:PTHR32219PANTHER:PTHR32219:SF2UniParc:UPI000276A4C0
UniProt:K4DCS1MapMan:35.1::::
Description
No Description!
Coordinates
chr12:+:4651498..4653389
Molecular Weight (calculated)
37977.8 Da
IEP (calculated)
10.347
GRAVY (calculated)
-0.964
Length
332 amino acids
Sequence
(BLAST)
001: MASQSARVPA ETVSEKKNLP KENKKMNNGA KVNEPIKFGS HGTKEPIKEE GKKVPVTALR KDAVEDWPEP KQIHSFYIVR YRRFEDQNLK PKFDQAEKEL
101: QKMNKTRFQL IEKLRARRAE RSELFGQRKP VSAENKEFRT VIEGKRKEIK PLQDALGKLR GPRKDGREGG VGLCSSEAEL DNLIKSLQYR IQHESIPLTE
201: EKKILREIKQ LEGTRGEIKE NVVLRAQIQD SMGEKESIQK QVKLISGGLD GVHKEQQAVK AKLKILDDQL DANTSQIKSL DEELKEVTKK RDAAFVRVQE
301: LRNQREEAIK CAFLQKRCTV AKGKTASRQE GC
Best Arabidopsis Sequence Match ( AT4G27500.2 )
(BLAST)
001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEITFS FLLYLNALCI LLSPF
Arabidopsis Description
PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.