CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16408

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	KRH16408	AT2G18960.1	12182706
AT4G27500.1	KRH16408	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22077	Soybean	endoplasmic reticulum	62.11	67.05
KRH27251	Soybean	endoplasmic reticulum, nucleus	58.65	64.57
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	49.17	57.77
CDX89242	Canola	cytoskeleton, cytosol, nucleus	32.48	50.35
GSMUA_Achr6P21610_001	Banana	cytosol	31.73	49.41
AT4G27500.1	Thale cress	nucleus	45.11	49.02
Bra019045.1-P	Field mustard	nucleus	44.06	48.43
CDY29843	Canola	nucleus	43.31	48.0
CDY56314	Canola	nucleus	33.23	47.53
CDX97389	Canola	nucleus	43.61	47.08
Solyc07g063100.2.1	Tomato	nucleus	43.46	46.02
PGSC0003DMT400032400	Potato	nucleus	42.86	45.31
Solyc12g013860.1.1	Tomato	unclear	22.41	44.88
CDY14276	Canola	nucleus	41.95	44.86
Bra026343.1-P	Field mustard	nucleus	42.41	44.48
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	22.71	44.28
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	38.95	42.53
EER96610	Sorghum	nucleus	39.25	42.3
Os08t0390000-02	Rice	nucleus	39.1	41.87
Zm00001d005636_P001	Maize	nucleus	38.8	41.82
HORVU5Hr1G041880.1	Barley	nucleus	38.65	41.32
Zm00001d020175_P002	Maize	golgi, plasma membrane	39.7	40.99
HORVU4Hr1G058930.1	Barley	nucleus	33.83	40.69
EER96609	Sorghum	cytosol	19.4	40.44
TraesCS5A01G186800.1	Wheat	nucleus	37.59	40.32
TraesCS5D01G192100.1	Wheat	nucleus	38.65	40.28
Os09t0346400-01	Rice	golgi, plasma membrane	37.89	40.19
TraesCS5B01G185200.2	Wheat	nucleus	37.59	39.68
HORVU0Hr1G030120.1	Barley	nucleus, plastid	38.95	38.48
Bra010401.1-P	Field mustard	nucleus	42.71	38.02
CDY24116	Canola	nucleus	20.9	34.92
Bra019016.1-P	Field mustard	nucleus	20.75	34.76
CDY26009	Canola	nucleus	20.6	34.25
AT3G15340.3	Thale cress	nucleus	29.17	32.94
Bra001590.1-P	Field mustard	nucleus	28.42	31.93
AT1G53110.1	Thale cress	nucleus	21.05	31.89
CDX98546	Canola	nucleus	26.77	31.5
AT5G36780.1	Thale cress	nucleus	27.22	31.42
AT5G36690.1	Thale cress	nucleus	27.22	31.42
Bra027261.1-P	Field mustard	nucleus	26.17	30.74
CDX97649	Canola	nucleus	25.41	30.56
CDY56315	Canola	nucleus	4.66	29.25
CDX82440	Canola	nucleus	26.77	28.85
CDX75821	Canola	nucleus	25.86	28.2
KRH66595	Soybean	nucleus	3.61	19.51
KRH00096	Soybean	nucleus	7.37	11.61
KRH49503	Soybean	endoplasmic reticulum	21.2	10.88
KRG89178	Soybean	endoplasmic reticulum, nucleus	20.6	9.13

Protein Annotations

EntrezGene:100793963	MapMan:35.1	UniProt:A0A0R0JV14	EMBL:ACUP02003939	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G240500
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0010155	GO:GO:0016020	GO:GO:0016021	EnsemblPlants:KRH55252
ProteinID:KRH55252	ProteinID:KRH55252.1	InterPro:PPI	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	TMHMM:TMhelix
UniParc:UPI0002339D22	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:39689963..39694877

Molecular Weight (calculated)

74738.9 Da

IEP (calculated)

8.405

GRAVY (calculated)

-0.861

Length

665 amino acids

Sequence
(BLAST)

001: MGVTPLDHAV FLDPAPFDNV KNRLVGADNA CLDLCQKGCP VVGAMAVEVV GFEMVQGPVE NGAKEDKSIS EKTENGKLEQ DTGVAEPTKF GSHGDESAKP
101: EANVVSDANV PKDAVDDWPA PRQIHSFYFV RFRPYDDPNI KAKLEKYDKE ISQENQARIQ VTDALRAKRT ERAGCISQIK SLKGDNRQFQ SIVDEKIKEI
201: EPLQQALGKL RTANNAGRGV GLCSSEEELN NLINSLHYRI QHESIPFAEE KQILREIKQL EGTREKVIAN AAMRAKVQDS MGQKEAIQDQ VKLIGGDLDG
301: VKKERQAIRS KIKQLEDTVK ALDKDIQSLQ DELGAVTEKR EKAYESIQQQ RKQRDQGNSY FYQSRTILNK ARELAAKKDI NAIEELAQTE VEKAMSLWNS
401: DKSFRDDYEK RLLPSLDMRQ LCRDGRMRNP DEKPLLEEPK PAETDTLPKS SVKQPKEEEP KSSPPETVPE QKIQKETKKK GKDLKSNLNK VLEDTDEYEF
501: ELPKVNKEPP IDPEKLKEMK REEEIAKAKQ ALERKKKQAE KAAAKAATRA QKEAEKKLKV REKKAKKVAG GTGAVPSPEE PANEAVEVAE QKTDDSMEAS
601: APAKEKVPKE SSVKFRNRAK ALKGPDTIPK AIMKRKRSNY DDWIWIASCV FLVLSALVFA YIILS

Best Arabidopsis Sequence Match ( AT3G15340.3 )
(BLAST)

001: MGAQIILSEG FEVVPPPEMN DLVLFGSNQS VSSCDVSTVT TEDGTVFSGD SSPGGATEED FPEEKPFSFY FVKQPAYDDP EIKAKIDEAG HEINRYNKDR
101: IVVSNAQESE KAEILSLFGQ MKSLVSKSEG YRVVIEEKKM EFDALHESLR NLRCSTSDQL CFSKEELDHL IYIAHYQIEH GSIGFEEEDW VLKETEKADG
201: IVLSEDSLAE KEASINRVKS MAVELNEVKK ELDAITWKIN HLSDKVGKSQ NNLRVLDVKK AHILEERDRS YERIKMLRIQ RDKGKAAFYQ SLPVMRKARE
301: LAASGNVRDL EVFASSEADR FMTQWNDDKA FRDDYVKRIS PSLCERQLNQ DGRIKDPEVQ VVWEKKVPVK GGEKVHETNR EDSSSNSSQY GSVITDKRKK
401: ETRKKAMDFN RSSAEESDVT DLEFSVYEKP KKEEEEVDEE TLKEREREEQ LEKARLAMER KRKLQEKAAA KAAIRAQKEA EKKLKECEKK AKKKAAANSS
501: SPSESDHSQE VTKDLEKVRT LAVSGKEKHQ KERSLFPKQR SFRYKHRGRG TEALPKAILN RRKAHKYWVW GLSSAALAVA LFLVVLLLR

Arabidopsis Description

PPI2PPI2 [Source:UniProtKB/TrEMBL;Acc:A0A178VC28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.