CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16408

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	KRH16408	AT2G18960.1	12182706
AT4G27500.1	KRH16408	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22077	Soybean	endoplasmic reticulum	88.41	86.69
KRH55252	Soybean	nucleus	64.57	58.65
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	50.5	53.89
AT4G27500.1	Thale cress	nucleus	51.99	51.31
GSMUA_Achr6P21610_001	Banana	cytosol	34.77	49.18
CDX89242	Canola	cytoskeleton, cytosol, nucleus	34.77	48.95
Solyc07g063100.2.1	Tomato	nucleus	50.5	48.57
Solyc12g013860.1.1	Tomato	unclear	26.32	47.89
PGSC0003DMT400032400	Potato	nucleus	49.5	47.54
Bra019045.1-P	Field mustard	nucleus	47.02	46.94
CDY29843	Canola	nucleus	46.19	46.5
CDX97389	Canola	nucleus	47.19	46.27
CDY56314	Canola	nucleus	35.43	46.02
Bra026343.1-P	Field mustard	nucleus	48.18	45.9
CDY14276	Canola	nucleus	47.02	45.66
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	44.87	44.5
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	24.83	43.99
EER96610	Sorghum	nucleus	44.7	43.76
Zm00001d005636_P001	Maize	nucleus	44.04	43.11
Os08t0390000-02	Rice	nucleus	43.38	42.19
Os09t0346400-01	Rice	golgi, plasma membrane	43.54	41.95
Zm00001d020175_P002	Maize	golgi, plasma membrane	44.54	41.77
HORVU5Hr1G041880.1	Barley	nucleus	42.88	41.64
HORVU4Hr1G058930.1	Barley	nucleus	38.08	41.59
EER96609	Sorghum	cytosol	21.85	41.38
TraesCS5A01G186800.1	Wheat	nucleus	41.72	40.65
TraesCS5B01G185200.2	Wheat	nucleus	41.89	40.16
TraesCS5D01G192100.1	Wheat	nucleus	42.38	40.13
HORVU0Hr1G030120.1	Barley	nucleus, plastid	42.88	38.48
Bra010401.1-P	Field mustard	nucleus	47.02	38.02
CDY26009	Canola	nucleus	24.01	36.25
Bra019016.1-P	Field mustard	nucleus	23.51	35.77
CDY24116	Canola	nucleus	23.18	35.18
AT1G53110.1	Thale cress	nucleus	25.33	34.85
Bra001590.1-P	Field mustard	nucleus	32.95	33.61
Bra027261.1-P	Field mustard	nucleus	31.29	33.39
CDX98546	Canola	nucleus	30.96	33.1
CDY56315	Canola	nucleus	5.79	33.02
AT5G36780.1	Thale cress	nucleus	31.29	32.81
AT5G36690.1	Thale cress	nucleus	31.29	32.81
CDX97649	Canola	nucleus	29.97	32.73
AT3G15340.3	Thale cress	nucleus	31.62	32.43
CDX82440	Canola	nucleus	30.96	30.31
CDX75821	Canola	nucleus	29.97	29.67
KRH66595	Soybean	nucleus	4.14	20.33
KRH49503	Soybean	endoplasmic reticulum	25.0	11.65
KRH00096	Soybean	nucleus	7.62	10.9
KRG89178	Soybean	endoplasmic reticulum, nucleus	25.66	10.33

Protein Annotations

MapMan:35.1	UniProt:A0A0R0HHC1	EMBL:ACUP02007788	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G224800	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0010155	GO:GO:0016020	GO:GO:0016021	EnsemblPlants:KRH27251	ProteinID:KRH27251
ProteinID:KRH27251.1	InterPro:PPI	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	SUPFAM:SSF57997	TMHMM:TMhelix
UniParc:UPI0006EDDAF0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:38432023..38436035

Molecular Weight (calculated)

68330.5 Da

IEP (calculated)

9.900

GRAVY (calculated)

-0.959

Length

604 amino acids

Sequence
(BLAST)

001: RKPVLNEKEN GKLEKDVGAA ADAIKFGTHG EESAKKKGND VSDVHAPKDA AEDWPAPKQI HSFYFVRWRP YDDPTIKSKI DLSDKDISKK NQARFQITEA
101: LKAKRAERVE LISQVKSLRG DSRQFQSIVD EKLKEIGPLQ QALGKLRTTN NAGRGGLCSS EDELNSVIYS LQYRIQHESI PLTEEKQILR EIKQLEGTRE
201: KVIANAAMRA KLQESMGQKE AIQDQVKLIG GDLDGVKKER EAIRSKIKQI DDALKAIDKD IQSLQEELTA VSQKRDKAFE SIQQLRKQRE EGNTYFYQSR
301: TVLNKARELA AKKDINALDE VSQTEVEKFM ALWNKDKAFR NDYEKRILAS LDMRQLSRDG RMRNPDEKPI LEEPKPAEAE ALPKMAAKQP KEEPKPSPQE
401: TLPAQKESKT TQKDSKNKGR DLKSKLESKD VAETDEYEFE SPEKEAPAKE PEIDPAKLKE MKREEEIVKA KQALERKKKL AEKAAAKAAI RAQKEAEKKL
501: KDREKKAKKK SGTAAVANPE DEPKDEVVEV TEPEKINDDV QAPAPVKEKV QKESGIRSRG RARGPDSIPK AIIKRKKSNN YLIWAAAATL LVLLLAVLGY
601: IYLF

Best Arabidopsis Sequence Match ( AT3G15340.3 )
(BLAST)

001: MGAQIILSEG FEVVPPPEMN DLVLFGSNQS VSSCDVSTVT TEDGTVFSGD SSPGGATEED FPEEKPFSFY FVKQPAYDDP EIKAKIDEAG HEINRYNKDR
101: IVVSNAQESE KAEILSLFGQ MKSLVSKSEG YRVVIEEKKM EFDALHESLR NLRCSTSDQL CFSKEELDHL IYIAHYQIEH GSIGFEEEDW VLKETEKADG
201: IVLSEDSLAE KEASINRVKS MAVELNEVKK ELDAITWKIN HLSDKVGKSQ NNLRVLDVKK AHILEERDRS YERIKMLRIQ RDKGKAAFYQ SLPVMRKARE
301: LAASGNVRDL EVFASSEADR FMTQWNDDKA FRDDYVKRIS PSLCERQLNQ DGRIKDPEVQ VVWEKKVPVK GGEKVHETNR EDSSSNSSQY GSVITDKRKK
401: ETRKKAMDFN RSSAEESDVT DLEFSVYEKP KKEEEEVDEE TLKEREREEQ LEKARLAMER KRKLQEKAAA KAAIRAQKEA EKKLKECEKK AKKKAAANSS
501: SPSESDHSQE VTKDLEKVRT LAVSGKEKHQ KERSLFPKQR SFRYKHRGRG TEALPKAILN RRKAHKYWVW GLSSAALAVA LFLVVLLLR

Arabidopsis Description

PPI2PPI2 [Source:UniProtKB/TrEMBL;Acc:A0A178VC28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.