Factsheet for Bra019016.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24116	Canola	nucleus	95.97	95.73
AT1G53110.1	Thale cress	nucleus	55.92	50.57
Bra027261.1-P	Field mustard	nucleus	43.83	30.74
Bra001590.1-P	Field mustard	nucleus	45.59	30.57
KRH22077	Soybean	endoplasmic reticulum	36.52	23.54
KRH27251	Soybean	endoplasmic reticulum, nucleus	35.77	23.51
Bra019045.1-P	Field mustard	nucleus	35.01	22.98
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	30.73	21.55
Solyc07g063100.2.1	Tomato	nucleus	33.5	21.18
PGSC0003DMT400032400	Potato	nucleus	33.25	20.99
KRH55252	Soybean	nucleus	34.76	20.75
Bra026343.1-P	Field mustard	nucleus	33.0	20.66
HORVU5Hr1G041880.1	Barley	nucleus	31.99	20.42
EER96610	Sorghum	nucleus	31.49	20.26
TraesCS5B01G185200.2	Wheat	nucleus	31.49	19.84
TraesCS5A01G186800.1	Wheat	nucleus	30.98	19.84
Os09t0346400-01	Rice	golgi, plasma membrane	30.98	19.62
Zm00001d005636_P001	Maize	nucleus	30.48	19.61
HORVU4Hr1G058930.1	Barley	nucleus	27.2	19.53
TraesCS5D01G192100.1	Wheat	nucleus	31.23	19.44
Zm00001d020175_P002	Maize	golgi, plasma membrane	30.98	19.1
HORVU0Hr1G030120.1	Barley	nucleus, plastid	31.99	18.87
Os08t0390000-02	Rice	nucleus	29.22	18.68
Bra010401.1-P	Field mustard	nucleus	34.26	18.21
GSMUA_Achr6P21610_001	Banana	cytosol	18.64	17.33
EER96609	Sorghum	cytosol	13.6	16.93
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	13.85	16.13
Solyc12g013860.1.1	Tomato	unclear	9.82	11.75
Bra025862.1-P	Field mustard	nucleus	19.9	5.63

Protein Annotations

EnsemblPlants:Bra019016.1	EnsemblPlants:Bra019016.1-P	EnsemblPlantsGene:Bra019016	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155
GO:GO:0016020	GO:GO:0016021	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2
SEG:seg	TMHMM:TMhelix	UniParc:UPI000253E802	UniProt:M4DR73	MapMan:35.1	:

Description

AT1G53110 (E=3e-080) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: PPI2 (proton pump interactor 2); protein binding (TAIR:AT3G15340.2); Has 9097 Blast hits to 6362 proteins in 564 species: Archae - 111; Bacteria - 824; Metazoa - 3326; Fungi - 733; Plants - 436; Viruses - 39; Other Eukaryotes - 3628 (source: NCBI BLink).

Coordinates

chrA06:-:750607..752190

Molecular Weight (calculated)

46651.2 Da

IEP (calculated)

6.931

GRAVY (calculated)

-0.963

Length

397 amino acids

Sequence
(BLAST)

001: MGSPVSLCNG GLDARRLVIG DLSSRETTEE EEDYAVFSGE EEEEEEEDGW REDRFCFYFV KQFAYDDPEI KAKIDEADNE IYNCNSERIH IANRLKAKRA
101: EKLSLMSSVD GYNVMSERLS EVEMEMELLD AQMGCVLDQR DRAFERIKLL RIQRDKGNAA FFQSRAVMKK AIELAACGNF RDLEELAYSE VDKFMSRWNN
201: DKAFRDDYKK RILPSLEERK VRRNEQIRSS ECDVDTENRD ETAVELKMFS TEEEEESDKE ALKEKRREEQ LEKAKLAMER KRKLHEKAAA KAARRAKKEA
301: EKKLKELEKR AKKKKDLERT PETVTEPSEP EKEKPLNGRS VSWNQRSLRY RHHKKGNENV PKAILKRRRA YRLWVWSVSS AALALPLALF IVFFYVR

Best Arabidopsis Sequence Match ( AT1G53110.1 )
(BLAST)

001: MSASILLCDG FDVRRILTGK LNGDESSTVT TEEDDEAVFS GEEWCGESSY CFYFVKQFAY DDPEIKAKID EADHEVYHCN TDRIHIANRL KSKRAARLSL
101: VASMETLMSM KINEVEKEQE VVRGRIYRLG ERLSEIKMEI ELLDVQMACV LNQRDKAVER IKFLRMQRDK GNAAFYQSRV VMKKAIELAA SGNVRDLEEL
201: ADSEVEKFMS RWNNDKAFRD NYKKRILPSV NERKLRCDVQ IRDLEGNLDT ENGNETVVKK AIEYKRFSTE EESDDFDIPV YEKLGKEEKE IDEETLKEKK
301: REEQLEKARL AMERKRKLHE KAAAKAVIRV KKEAEKKRKE LDKRAKKKKA VCKSSSVDVD RTTETVSEAS KPEKEKLLNG RSVFPKQRSY NYRYHGKGND
401: AVLKAIIKRR KAYRLWVWTV SSAAVALPLA LLVVFYYVR

Arabidopsis Description

PPI4Proton pump-interactor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZN4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.