Factsheet for TraesCS5D01G192100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G502400.1
TraesCS2B01G530500.1
TraesCS2D01G503000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	TraesCS2A01G502400.1	AT2G18960.1	12182706
AT4G27500.1	TraesCS2B01G530500.1	AT2G18960.1	12182706
AT4G27500.1	TraesCS2D01G503000.1	AT2G18960.1	12182706
AT4G27500.1	TraesCS2A01G502400.1	AT2G18960.1	16279950
AT4G27500.1	TraesCS2B01G530500.1	AT2G18960.1	16279950
AT4G27500.1	TraesCS2D01G503000.1	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G186800.1	Wheat	nucleus	93.26	95.97
TraesCS5B01G185200.2	Wheat	nucleus	93.73	94.92
HORVU5Hr1G041880.1	Barley	nucleus	90.44	92.77
HORVU4Hr1G058930.1	Barley	nucleus	74.61	86.08
HORVU0Hr1G030120.1	Barley	nucleus, plastid	90.75	86.03
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	45.61	85.34
EER96610	Sorghum	nucleus	70.53	72.93
Zm00001d005636_P001	Maize	nucleus	68.65	70.99
Zm00001d020175_P002	Maize	golgi, plasma membrane	70.69	70.03
Os09t0346400-01	Rice	golgi, plasma membrane	67.08	68.26
EER96609	Sorghum	cytosol	29.31	58.62
GSMUA_Achr6P21610_001	Banana	cytosol	30.41	45.43
Bra019045.1-P	Field mustard	nucleus	40.44	42.64
CDY29843	Canola	nucleus	39.97	42.5
KRH27251	Soybean	endoplasmic reticulum, nucleus	40.13	42.38
KRH22077	Soybean	endoplasmic reticulum	40.75	42.21
AT4G27500.1	Thale cress	nucleus	40.13	41.83
CDY56314	Canola	nucleus	30.41	41.72
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	36.83	41.52
CDX97389	Canola	nucleus	39.66	41.07
CDX89242	Canola	cytoskeleton, cytosol, nucleus	27.59	41.03
PGSC0003DMT400032400	Potato	nucleus	38.71	39.27
CDY14276	Canola	nucleus	38.24	39.23
Solyc07g063100.2.1	Tomato	nucleus	38.4	39.01
KRH55252	Soybean	nucleus	40.28	38.65
Bra026343.1-P	Field mustard	nucleus	37.62	37.85
Solyc12g013860.1.1	Tomato	unclear	18.81	36.14
CDY56315	Canola	nucleus	5.96	35.85
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	34.17	35.8
Bra010401.1-P	Field mustard	nucleus	38.24	32.66
CDY26009	Canola	nucleus	19.91	31.75
CDY24116	Canola	nucleus	19.75	31.66
Bra019016.1-P	Field mustard	nucleus	19.44	31.23
Bra001590.1-P	Field mustard	nucleus	27.43	29.56
AT1G53110.1	Thale cress	nucleus	20.22	29.39
AT3G15340.3	Thale cress	nucleus	26.65	28.86
AT5G36780.1	Thale cress	nucleus	24.61	27.26
AT5G36690.1	Thale cress	nucleus	24.61	27.26
Bra027261.1-P	Field mustard	nucleus	23.67	26.68
CDX75821	Canola	nucleus	25.39	26.56
CDX82440	Canola	nucleus	25.55	26.42
CDX97649	Canola	nucleus	22.88	26.4
CDX98546	Canola	nucleus	23.35	26.37
TraesCS5D01G277600.3	Wheat	nucleus	22.1	9.96

Protein Annotations

EnsemblPlants:TraesCS5D01G192100.1	EnsemblPlantsGene:TraesCS5D01G192100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155	GO:GO:0016020
InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	SEG:seg	TMHMM:TMhelix
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:294944619..294947638

Molecular Weight (calculated)

71829.2 Da

IEP (calculated)

9.438

GRAVY (calculated)

-0.872

Length

638 amino acids

Sequence
(BLAST)

001: MVACFGNSLC TPICRDMGME VVGAEAAPAQ VKVADEEVTL FQDKESQATA KEREEAAVFG SDNGKAAAND MAPPKDAAEE WPEPKQTYTF YFVKVRSFED
101: PKLRAKLEQA EKDFQNKIQA RAKIIDAIKA KKTERAAVLA ELRPLSAENR QYNEAFNEKL EEMKPYRNRL GKFRDENNAM RAESAGLCSS LEELEHEIKR
201: LNHRISHESI SLDEEKRLIK EIKTLEKTRP KVSSNAAKRA KMQDTVVERD AIQDQVKIIG DGIDGVKKER QAVRSKIKVL DDEMRVVDGE IALLQEDLNA
301: ATARKDKAYE SLTELRKARD LANASFHQNR IVLNRARDYS SRNEVEELQE LHKTEVEKFM TQWCSSKTFR EDYEKRILTS LNGRQLTRDG RMRNPDEKPI
401: FIETQQPAAP VQQEPIPSKA PLKQAKEAAA PQVVAPKEEP LAKASAKSAK VKAAVDADDD AYEAEPPKEK PKPKEVDVAK LKEIKRQEEI EKNRLALERK
501: KKQAEKQAAK AAARAQKEAE KKLKKEEKKT KKKTEAADTD EPTDSDTKSD EAAETQAEDE FTPASVIVNK EQKPNARSRN VVTKTKAPLP KAILKRKKAQ
601: SYRSWATPAV VISAVAVLVA LLAALGYYQY YRPASTSN

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.