Factsheet for PGSC0003DMT400032400

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010497

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	PGSC0003DMT400010497	AT2G18960.1	12182706
AT4G27500.1	PGSC0003DMT400010497	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063100.2.1	Tomato	nucleus	92.53	92.68
KRH22077	Soybean	endoplasmic reticulum	49.44	50.49
KRH27251	Soybean	endoplasmic reticulum, nucleus	47.54	49.5
Bra019045.1-P	Field mustard	nucleus	46.9	48.76
CDY29843	Canola	nucleus	46.42	48.67
AT4G27500.1	Thale cress	nucleus	46.74	48.04
CDX89242	Canola	cytoskeleton, cytosol, nucleus	32.43	47.55
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	42.77	47.53
CDX97389	Canola	nucleus	46.42	47.4
CDY14276	Canola	nucleus	45.31	45.82
CDY56314	Canola	nucleus	33.07	44.73
Bra026343.1-P	Field mustard	nucleus	44.99	44.64
GSMUA_Achr6P21610_001	Banana	cytosol	30.05	44.26
CDY56315	Canola	nucleus	7.31	43.4
KRH55252	Soybean	nucleus	45.31	42.86
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	22.73	41.94
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	40.22	41.54
EER96610	Sorghum	nucleus	40.22	41.0
HORVU5Hr1G041880.1	Barley	nucleus	39.9	40.35
HORVU4Hr1G058930.1	Barley	nucleus	35.45	40.33
Zm00001d005636_P001	Maize	nucleus	39.11	39.87
Os08t0390000-02	Rice	nucleus	39.11	39.61
TraesCS5A01G186800.1	Wheat	nucleus	38.63	39.19
TraesCS5B01G185200.2	Wheat	nucleus	38.95	38.89
TraesCS5D01G192100.1	Wheat	nucleus	39.27	38.71
Zm00001d020175_P002	Maize	golgi, plasma membrane	39.59	38.66
Os09t0346400-01	Rice	golgi, plasma membrane	38.47	38.6
Bra010401.1-P	Field mustard	nucleus	45.47	38.29
EER96609	Sorghum	cytosol	19.4	38.24
HORVU0Hr1G030120.1	Barley	nucleus, plastid	39.9	37.3
CDY24116	Canola	nucleus	21.46	33.92
Bra001590.1-P	Field mustard	nucleus	31.32	33.28
Bra019016.1-P	Field mustard	nucleus	20.99	33.25
CDX98546	Canola	nucleus	29.57	32.92
CDY26009	Canola	nucleus	20.67	32.5
AT3G15340.3	Thale cress	nucleus	30.21	32.26
AT1G53110.1	Thale cress	nucleus	21.94	31.44
AT5G36780.1	Thale cress	nucleus	28.78	31.42
AT5G36690.1	Thale cress	nucleus	28.78	31.42
Bra027261.1-P	Field mustard	nucleus	28.14	31.27
CDX97649	Canola	nucleus	27.03	30.74
CDX75821	Canola	nucleus	29.09	30.0
CDX82440	Canola	nucleus	29.25	29.82

Protein Annotations

EntrezGene:102591229	MapMan:35.1	ProteinID:ADE42483	ProteinID:ADE42483.1	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0010155	GO:GO:0016020	GO:GO:0016021	EMBL:GU808087	UniProt:M1AXD5
EnsemblPlantsGene:PGSC0003DMG400012445	PGSC:PGSC0003DMG400012445	EnsemblPlants:PGSC0003DMT400032400	InterPro:PPI	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2
TMHMM:TMhelix	UniParc:UPI0002956C83	RefSeq:XP_006348256.1	RefSeq:XP_006348257.1	RefSeq:XP_015164623.1	SEG:seg

Description

Proton pump interactor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012445]

Coordinates

chr7:-:53158312..53163820

Molecular Weight (calculated)

71133.3 Da

IEP (calculated)

9.821

GRAVY (calculated)

-0.859

Length

629 amino acids

Sequence
(BLAST)

001: MGVEVEAKLV HVPVEAGSEQ INLLKENGKP NHVSGITEPI KFGSHGTEEP KKEEVSRIPV SNVPKDAVED WPEPKQIHSF YTVKFRRFDD PKLKARIELA
101: EKELQKKNQA RSQIIEKLKA KRAEKSIFIE QRKALSAENK EFWSAIDGKI KEMVPLHEAL GQLRGSRNAG RERGPTVCSS EEELNHLIKG LQYRIQHESI
201: PLNEEKQILR EIKQLEGTRE DVKKVAAARA QIHETMGEKE SIQNQVKLMN VGLDGVRKGQ QEVKGRLKII DDQIDAINKQ IGILDEELKG VVEKRDKTYE
301: HILELRKLRE EGNSSFYQNS NVLHKVKQLA DQKDVGALKE LSVTEVDKFI SLWCGSKSFR DDYERRLLQS LDIRQLSRDG RMRNPGEKPL VLPEAPTVSR
401: AEVPARANAK PVKEDHAPVD AAPIQKEQQE KSGKQLNDAH GKNTKSTEKK AVVVDDEEIY GLDLPKDIKP KKTEVDEVTL KEMKKEEEIA KNKQAMERKR
501: KLAEKAAAKA AKKAQLEAEK KLKEREKKAK KKGGSSAAGQ EPTEEPTETP EEIAEEENAE ETVETAVAPK VKARKDNTIR HRATRARGSE LPKSILKRKK
601: ATNYWLWAAA PAALAILVLL VIGYMYLQK

Best Arabidopsis Sequence Match ( AT4G27500.2 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEITFS FLLYLNALCI LLSPF

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.