Factsheet for Bra010401.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024452.1-P
Bra038835.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	Bra024452.1-P	AT2G18960.1	12182706
AT4G27500.1	Bra038835.1-P	AT2G18960.1	12182706
AT4G27500.1	Bra024452.1-P	AT2G18960.1	16279950
AT4G27500.1	Bra038835.1-P	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97389	Canola	nucleus	74.03	89.77
Bra019045.1-P	Field mustard	nucleus	57.16	70.58
AT4G27500.1	Thale cress	nucleus	57.7	70.42
Bra026343.1-P	Field mustard	nucleus	56.76	66.88
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	36.55	48.23
KRH27251	Soybean	endoplasmic reticulum, nucleus	38.02	47.02
KRH22077	Soybean	endoplasmic reticulum	38.55	46.75
Solyc07g063100.2.1	Tomato	nucleus	38.42	45.7
PGSC0003DMT400032400	Potato	nucleus	38.29	45.47
KRH55252	Soybean	nucleus	38.02	42.71
GSMUA_Achr6P21610_001	Banana	cytosol	24.23	42.39
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	19.01	41.64
Solyc12g013860.1.1	Tomato	unclear	18.34	41.27
EER96609	Sorghum	cytosol	17.4	40.75
EER96610	Sorghum	nucleus	33.07	40.03
Zm00001d005636_P001	Maize	nucleus	32.93	39.87
HORVU5Hr1G041880.1	Barley	nucleus	32.66	39.23
TraesCS5A01G186800.1	Wheat	nucleus	31.99	38.55
HORVU4Hr1G058930.1	Barley	nucleus	28.51	38.52
TraesCS5B01G185200.2	Wheat	nucleus	32.26	38.25
TraesCS5D01G192100.1	Wheat	nucleus	32.66	38.24
Os08t0390000-02	Rice	nucleus	31.73	38.16
Zm00001d020175_P002	Maize	golgi, plasma membrane	32.8	38.04
Os09t0346400-01	Rice	golgi, plasma membrane	30.52	36.36
HORVU0Hr1G030120.1	Barley	nucleus, plastid	32.66	36.26
Bra019016.1-P	Field mustard	nucleus	18.21	34.26
Bra001590.1-P	Field mustard	nucleus	25.84	32.6
Bra027261.1-P	Field mustard	nucleus	23.29	30.74
Bra025862.1-P	Field mustard	nucleus	18.34	9.77

Protein Annotations

EnsemblPlants:Bra010401.1	EnsemblPlants:Bra010401.1-P	EnsemblPlantsGene:Bra010401	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155
GO:GO:0016020	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	SEG:seg
UniParc:UPI0002545692	UniProt:M4D1Q1	MapMan:35.1	:	:	:

Description

AT4G27500 (E=1e-161) PPI1 | PPI1 (PROTON PUMP INTERACTOR 1); protein binding

Coordinates

chrA08:-:14339241..14343573

Molecular Weight (calculated)

84061.7 Da

IEP (calculated)

9.686

GRAVY (calculated)

-1.037

Length

747 amino acids

Sequence
(BLAST)

001: MGVEVVNFGG FEVAPAPFEA KPETKPETNG KVEQGKGEPP KKAEESSSSS KISSDVPKDA AEEWPAAKQI RSFYFVKYRH FDDPKIKAKL EVADKELEKL
101: NKARSVVIEG LRAKKAERSK LFDMLDPLKS ERQGFNNKFD EKRKEMEPLQ QALGKLRGND GGSSRGPVIC SSQEELNSMI YSYEYRIQHE SIPLTEEKQL
201: LKEIRLLEGT RDKVIANEAM RAKIKEAMGH KDDIQGQVKL MGAGLDGVKK ERQAISARIN ELSEKVKATK DEIQVLENEL KTVTEKRDKA YSNIRELKKQ
301: SAETNSGFYQ GRNVLNKARE LAAQRNVDEL EALSNAEVEK FVSLWCSKKN FREDYEKRLL GSLDARQMSR DGRMRNPEEK PLVAREAPQA KAAPSVTEVV
401: PKANKAKQQQ PKEEEVSAPK PDAAAPVAQK AEKAKDAEKG KKNVVVVDDD DDEEEEEVYG LGKPQKEEEE VDEATVKEMR KQEEIAKAKL AMERKKKLAE
501: KAAAKAAIRA KKEAEKKEQK EREKAAKKKT GGRNAYEAIS EEVPEASEAE KEEIEVPVEE KPKKEKKVLK EKPIRNRIRN RGGPETLPRP MLKRKKQTNY
601: MVWAAPAAAA VVGKDGGEES KQQGMGTTTD GRADDPCRVG SNTSSSAGDP CRYLKPIIKI RGRVVSEIAL EEDEKMSKQH VYRSLMKKTK RPFSAQVSYK
701: TRRSSKRTQS RAKEMDFGNW KFDDDTVLDD DTVRDGSMTG DGRWAMT

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.