Factsheet for HORVU5Hr1G041880.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G111640.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	HORVU2Hr1G111640.2	AT2G18960.1	12182706
AT4G27500.1	HORVU2Hr1G111640.2	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G030120.1	Barley	nucleus, plastid	100.0	92.42
HORVU4Hr1G058930.1	Barley	nucleus	81.19	91.32
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	49.84	90.91
TraesCS5A01G186800.1	Wheat	nucleus	90.51	90.81
TraesCS5D01G192100.1	Wheat	nucleus	92.77	90.44
TraesCS5B01G185200.2	Wheat	nucleus	91.16	90.0
EER96610	Sorghum	nucleus	71.22	71.8
Zm00001d005636_P001	Maize	nucleus	69.45	70.02
Zm00001d020175_P002	Maize	golgi, plasma membrane	71.06	68.63
Os09t0346400-01	Rice	golgi, plasma membrane	68.65	68.1
EER96609	Sorghum	cytosol	30.39	59.25
GSMUA_Achr6P21610_001	Banana	cytosol	31.35	45.67
Bra019045.1-P	Field mustard	nucleus	42.6	43.8
CDY29843	Canola	nucleus	42.12	43.67
KRH27251	Soybean	endoplasmic reticulum, nucleus	41.64	42.88
KRH22077	Soybean	endoplasmic reticulum	42.28	42.69
CDY56314	Canola	nucleus	31.83	42.58
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	38.59	42.4
AT4G27500.1	Thale cress	nucleus	41.0	41.67
CDX97389	Canola	nucleus	40.68	41.07
CDX89242	Canola	cytoskeleton, cytosol, nucleus	28.3	41.03
PGSC0003DMT400032400	Potato	nucleus	40.35	39.9
CDY14276	Canola	nucleus	39.39	39.39
Solyc07g063100.2.1	Tomato	nucleus	39.71	39.33
KRH55252	Soybean	nucleus	41.32	38.65
Bra026343.1-P	Field mustard	nucleus	38.75	38.01
Solyc12g013860.1.1	Tomato	unclear	19.77	37.05
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	35.21	35.96
CDY56315	Canola	nucleus	6.11	35.85
Bra010401.1-P	Field mustard	nucleus	39.23	32.66
CDY24116	Canola	nucleus	20.74	32.41
CDY26009	Canola	nucleus	20.74	32.25
Bra019016.1-P	Field mustard	nucleus	20.42	31.99
Bra001590.1-P	Field mustard	nucleus	27.65	29.05
AT1G53110.1	Thale cress	nucleus	20.42	28.93
AT3G15340.3	Thale cress	nucleus	26.69	28.18
AT5G36780.1	Thale cress	nucleus	25.24	27.26
AT5G36690.1	Thale cress	nucleus	25.24	27.26
Bra027261.1-P	Field mustard	nucleus	24.28	26.68
CDX98546	Canola	nucleus	24.12	26.55
CDX97649	Canola	nucleus	23.47	26.4
CDX75821	Canola	nucleus	25.72	26.23
CDX82440	Canola	nucleus	25.72	25.93
HORVU5Hr1G073990.1	Barley	mitochondrion	22.51	13.22

Protein Annotations

EnsemblPlants:HORVU5Hr1G041880.1	EnsemblPlantsGene:HORVU5Hr1G041880	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155	GO:GO:0016020
GO:GO:0016021	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	SEG:seg
TMHMM:TMhelix	UniParc:UPI000B478D20	UniProt:A0A287QYS2	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr5H:+:317925587..317928821

Molecular Weight (calculated)

70142.1 Da

IEP (calculated)

9.630

GRAVY (calculated)

-0.921

Length

622 amino acids

Sequence
(BLAST)

001: MGMEVVGAEA APAQVKVADE EVALFQDKES QATAREREEA AVFGSDNGKA AANAPNGSDM APPKDAADEW PEPKQTYTFY FVKVRSFEDP KLRAKLEQAE
101: KDFQNKIQAR SKIIEAIKAK KTERAAVLAE LRPLSAENRQ YNEAFNEKLE EMKPFRNRLG KFRDENNAMR AESAGLCSSL EELEHEIKRL NHRISHESIS
201: LDEEKRLIKE IKTLEKTRPK VSSNAAKRAK MQDTVVERDA IQDQVKIIGD GIDGVKKERQ AVRSKIKVLD DEMKVVDGEI ALLQEDLNAA TARKDKAYES
301: LTELRKLRDL ANASFHQNRI VLNKARDYSS RNEVEELQEL HKTEVEKFMT QWCSSKTFRE DYEKRILTSL NGRQLTRDGR MRNPDEKPIF IETQQPVAQE
401: PVPLKAPLKQ AKEAAAPQVV APKEEPLAKA SAKSAKVKAS VDADDDAYEA EPPKEKPKPK EVDVAKLKEI KRQEEIEKNK LALERKKKQA EKQAAKAAAR
501: AQKEAEKKLK KEEKKTKKKT EPADTDEPTD SDTKSDEAAE AQAEDEFTPT TLNKEQKQNV RPRNVVTKTK APLPKAILKR KKAQSYRSWA TPAVVISAVA
601: VLVALLAALG YYQYYRPAST SN

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.