CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75821	Canola	nucleus	89.95	90.98
Bra001590.1-P	Field mustard	nucleus	86.39	90.03
AT3G15340.3	Thale cress	nucleus	62.4	65.36
CDX98546	Canola	nucleus	57.21	62.48
CDX97649	Canola	nucleus	51.7	57.69
AT5G36690.1	Thale cress	nucleus	49.92	53.47
AT5G36780.1	Thale cress	nucleus	49.92	53.47
CDY26009	Canola	nucleus	28.04	43.25
CDY24116	Canola	nucleus	27.55	42.71
CDY29843	Canola	nucleus	30.63	31.5
KRH22077	Soybean	endoplasmic reticulum	31.44	31.49
KRH27251	Soybean	endoplasmic reticulum, nucleus	30.31	30.96
CDX89242	Canola	cytoskeleton, cytosol, nucleus	21.23	30.54
Solyc07g063100.2.1	Tomato	nucleus	30.96	30.41
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	27.71	30.21
CDY56314	Canola	nucleus	22.53	29.89
CDX97389	Canola	nucleus	29.34	29.38
PGSC0003DMT400032400	Potato	nucleus	29.82	29.25
CDY14276	Canola	nucleus	29.34	29.1
GSMUA_Achr6P21610_001	Banana	cytosol	19.94	28.81
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	27.07	27.42
EER96610	Sorghum	nucleus	27.23	27.23
KRH55252	Soybean	nucleus	28.85	26.77
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	14.75	26.69
Zm00001d005636_P001	Maize	nucleus	26.58	26.58
TraesCS5A01G186800.1	Wheat	nucleus	26.58	26.45
HORVU4Hr1G058930.1	Barley	nucleus	23.34	26.04
EER96609	Sorghum	cytosol	13.45	26.02
HORVU5Hr1G041880.1	Barley	nucleus	25.93	25.72
TraesCS5B01G185200.2	Wheat	nucleus	26.26	25.71
TraesCS5D01G192100.1	Wheat	nucleus	26.42	25.55
Zm00001d020175_P002	Maize	golgi, plasma membrane	26.58	25.47
Os09t0346400-01	Rice	golgi, plasma membrane	25.61	25.2
Os08t0390000-02	Rice	nucleus	25.28	25.12
HORVU0Hr1G030120.1	Barley	nucleus, plastid	25.93	23.77
Solyc12g013860.1.1	Tomato	unclear	12.32	22.89
CDY56315	Canola	nucleus	3.89	22.64
CDY04588	Canola	nucleus	18.15	8.19
CDY29491	Canola	nucleus	18.15	8.12

Protein Annotations

MapMan:35.1	GO:A0A078D025	EnsemblPlants:CDX82440	ProteinID:CDX82440	ProteinID:CDX82440.1	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0010155	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00137576001	InterPro:PPI
PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	TMHMM:TMhelix	UniParc:UPI0004EE0796	SEG:seg	:

Description

BnaA03g33810D

Coordinates

chrLK031828:+:1295671..1299649

Molecular Weight (calculated)

70110.4 Da

IEP (calculated)

7.847

GRAVY (calculated)

-0.630

Length

617 amino acids

Sequence
(BLAST)

001: MGAQIVLCDG FEVVSPPEMS DLILFGSDQS SGSNCGESTV TTEEDGTVFS GDSSPGGAAE DEWPEAKPFS FYFVKRPAYD DPEIKAKINE ADSQIYHCNK
101: LRIDISNAQK SERAEISSLY AQMESLGPKS EGYKMVFDEK KNEFDTLHEV LRNQRCSSSS QLSFSKEELN HLIYIAHYVI EHGNIGLEEE HWVLKETEKP
201: SEIVLSEDSL AEKEASIQRL KLMAVEMNEV KKELEAITWN INCLSDKLRQ IQNKIMMLDV EMAHILELRD RSYERIKMLR IQRDKGNAAC FQSLAVMRKA
301: KELAASGNVR DLEVLSSSEV DRFMTSWNND KAYRDDYVKR ISPSLYERQL SLDGRIRDQE GEAQVVQEKQ ALLKNGEEGM VVMHKRNREE SSSNSSQDEN
401: VVTAKQKKEV RKKVIDFNRS SDEESLEKAR LAMERKKKLQ EKAAAKAALR AQKEAEKKLK ANYIISECEK KAKKKAAANS SEVDQSQEVT NELEKVKTSA
501: VHRSLFRKQK SFRYKHRGRG TEALPKAILN RRRAHQYWVW GVSSAALALA LSLGVLFLRF SVKRLATVSQ ELMAEMSPVM SSDKLPQSST ASSPHLSKRR
601: YVHELYISFV ANIQMIS

Best Arabidopsis Sequence Match ( AT3G15340.3 )
(BLAST)

001: MGAQIILSEG FEVVPPPEMN DLVLFGSNQS VSSCDVSTVT TEDGTVFSGD SSPGGATEED FPEEKPFSFY FVKQPAYDDP EIKAKIDEAG HEINRYNKDR
101: IVVSNAQESE KAEILSLFGQ MKSLVSKSEG YRVVIEEKKM EFDALHESLR NLRCSTSDQL CFSKEELDHL IYIAHYQIEH GSIGFEEEDW VLKETEKADG
201: IVLSEDSLAE KEASINRVKS MAVELNEVKK ELDAITWKIN HLSDKVGKSQ NNLRVLDVKK AHILEERDRS YERIKMLRIQ RDKGKAAFYQ SLPVMRKARE
301: LAASGNVRDL EVFASSEADR FMTQWNDDKA FRDDYVKRIS PSLCERQLNQ DGRIKDPEVQ VVWEKKVPVK GGEKVHETNR EDSSSNSSQY GSVITDKRKK
401: ETRKKAMDFN RSSAEESDVT DLEFSVYEKP KKEEEEVDEE TLKEREREEQ LEKARLAMER KRKLQEKAAA KAAIRAQKEA EKKLKECEKK AKKKAAANSS
501: SPSESDHSQE VTKDLEKVRT LAVSGKEKHQ KERSLFPKQR SFRYKHRGRG TEALPKAILN RRKAHKYWVW GLSSAALAVA LFLVVLLLR

Arabidopsis Description

PPI2PPI2 [Source:UniProtKB/TrEMBL;Acc:A0A178VC28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.