CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82608
CDY14177
CDY30294
CDY45897
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	CDX82608	AT2G18960.1	12182706
AT4G27500.1	CDY14177	AT2G18960.1	12182706
AT4G27500.1	CDY30294	AT2G18960.1	12182706
AT4G27500.1	CDY45897	AT2G18960.1	12182706
AT4G27500.1	CDY56511	AT2G18960.1	12182706
AT4G27500.1	CDY62140	AT2G18960.1	12182706
AT4G27500.1	CDY62141	AT2G18960.1	12182706
AT4G27500.1	CDY64741	AT2G18960.1	12182706
AT4G27500.1	CDX82608	AT2G18960.1	16279950
AT4G27500.1	CDY14177	AT2G18960.1	16279950
AT4G27500.1	CDY30294	AT2G18960.1	16279950
AT4G27500.1	CDY45897	AT2G18960.1	16279950
AT4G27500.1	CDY56511	AT2G18960.1	16279950
AT4G27500.1	CDY62140	AT2G18960.1	16279950
AT4G27500.1	CDY62141	AT2G18960.1	16279950
AT4G27500.1	CDY64741	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14276	Canola	nucleus	84.74	83.92
Bra010401.1-P	Field mustard	nucleus	89.77	74.03
CDY29843	Canola	nucleus	71.27	73.17
AT4G27500.1	Thale cress	nucleus	71.43	71.9
CDY56314	Canola	nucleus	54.22	71.83
CDX89242	Canola	cytoskeleton, cytosol, nucleus	48.86	70.16
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	60.71	61.41
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	45.13	49.12
CDY56315	Canola	nucleus	8.44	49.06
KRH22077	Soybean	endoplasmic reticulum	47.56	47.56
KRH27251	Soybean	endoplasmic reticulum, nucleus	46.27	47.19
PGSC0003DMT400032400	Potato	nucleus	47.4	46.42
Solyc07g063100.2.1	Tomato	nucleus	47.08	46.18
KRH55252	Soybean	nucleus	47.08	43.61
GSMUA_Achr6P21610_001	Banana	cytosol	29.38	42.39
EER96610	Sorghum	nucleus	41.23	41.17
Solyc12g013860.1.1	Tomato	unclear	22.08	40.96
Zm00001d005636_P001	Maize	nucleus	40.91	40.84
HORVU5Hr1G041880.1	Barley	nucleus	41.07	40.68
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	22.4	40.47
EER96609	Sorghum	cytosol	20.78	40.13
TraesCS5A01G186800.1	Wheat	nucleus	40.26	40.0
TraesCS5B01G185200.2	Wheat	nucleus	40.58	39.68
TraesCS5D01G192100.1	Wheat	nucleus	41.07	39.66
HORVU4Hr1G058930.1	Barley	nucleus	35.55	39.6
Zm00001d020175_P002	Maize	golgi, plasma membrane	40.91	39.13
Os08t0390000-02	Rice	nucleus	38.8	38.49
Os09t0346400-01	Rice	golgi, plasma membrane	38.47	37.8
HORVU0Hr1G030120.1	Barley	nucleus, plastid	41.07	37.59
CDY24116	Canola	nucleus	22.73	35.18
CDY26009	Canola	nucleus	21.59	33.25
CDX97649	Canola	nucleus	27.92	31.1
CDX98546	Canola	nucleus	28.41	30.97
CDX75821	Canola	nucleus	29.38	29.67
CDX82440	Canola	nucleus	29.38	29.34
CDY04588	Canola	nucleus	23.7	10.67
CDY29491	Canola	nucleus	23.38	10.43

Protein Annotations

EnsemblPlants:CDX97389	EnsemblPlantsGene:GSBRNA2T00104502001	GO:A0A078E9H2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155
GO:GO:0016020	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	ProteinID:CDX97389
ProteinID:CDX97389.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF2C80	MapMan:35.1	:

Description

BnaC08g12540D

Coordinates

chrLK031899:+:253220..256206

Molecular Weight (calculated)

69445.9 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.966

Length

616 amino acids

Sequence
(BLAST)

001: MGVEVVNFGG FEVAPAPFEA KPETNGKVEQ GKGDKPPKKA EESSSSSKIS SDVPKDAAEE WPAAKQIRSF YFVKYRRNDD PKIKAKLEVA DKEVEKLNKA
101: RSAVIEELRA KKAERSKLFD MLDPLKSERQ GFNNKFDEKR KEMEPLQQAL GKLRGNDGGS SRGPVICSSQ EELNSMIYSY EYRIQHESIP LTEEKQLLKE
201: IRLLEGTRDK VIANEAMRAK IKEAMGHKDD IQGQVKLMGA GLDGVKKERQ AISARINELS EKVKATKDEI QVLENELKTV TEKRDKAYSN IRDLKKQSVE
301: TNSGFYQGRN VLNKARELAA QRNVDELEAL SNAEVEKFVS LWCSNKNFRE DYEKRLLGSL DARQMSRDGR MRNPEEKPLV AREAPSAKAA PSVTEVVPKP
401: KAKQQQPKEE EVSAPKPDAA PPVAQKAEKA KEAVKGKKNV VVDDDDEEEE VYGLGKPQKE EEEVDEATVK EMRKQEEIAK AKLAMERKKK LAEKAAAKAA
501: IRAQKEAEKK EQKEREKAAK KKTGGSNAYE AISEEVPEAS EAEKEETEAP VEEKPKKEKK VLKEKPIRNR IRNRGGPETL PRPMLKRKKQ TNYMVWAAPA
601: AVVVLMLLVL GYYYVL

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.