CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, endoplasmic reticulum

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 2
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	endoplasmic reticulum, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82608
CDX89242
CDX97389
CDY14177
CDY14276
CDY19058
CDY29843
CDY30294
CDY45897
CDY56314
CDY56315
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18960.1	CDX82608	AT2G18960.1	12182706
AT2G18960.1	CDY14177	AT2G18960.1	12182706
AT2G18960.1	CDY30294	AT2G18960.1	12182706
AT2G18960.1	CDY45897	AT2G18960.1	12182706
AT2G18960.1	CDY56511	AT2G18960.1	12182706
AT2G18960.1	CDY62140	AT2G18960.1	12182706
AT2G18960.1	CDY62141	AT2G18960.1	12182706
AT2G18960.1	CDY64741	AT2G18960.1	12182706
AT2G18960.1	CDX89242	AT4G27500.1	12182706
AT2G18960.1	CDX97389	AT4G27500.1	12182706
AT2G18960.1	CDY14276	AT4G27500.1	12182706
AT2G18960.1	CDY19058	AT4G27500.1	12182706
AT2G18960.1	CDY29843	AT4G27500.1	12182706
AT2G18960.1	CDY56314	AT4G27500.1	12182706
AT2G18960.1	CDY56315	AT4G27500.1	12182706
AT2G18960.1	CDX89242	AT4G27500.1	16279950
AT2G18960.1	CDX97389	AT4G27500.1	16279950
AT2G18960.1	CDY14276	AT4G27500.1	16279950
AT2G18960.1	CDY19058	AT4G27500.1	16279950
AT2G18960.1	CDY29843	AT4G27500.1	16279950
AT2G18960.1	CDY56314	AT4G27500.1	16279950
AT2G18960.1	CDY56315	AT4G27500.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09517	Canola	cytosol, endoplasmic reticulum, plasma membrane	83.26	95.94
CDX96220	Canola	endoplasmic reticulum, nucleus, plasma membrane	83.26	85.14
CDY39222	Canola	plasma membrane	81.94	80.17
CDY35173	Canola	cytosol	81.5	57.63
CDY34800	Canola	endoplasmic reticulum, plasma membrane, plastid	23.35	53.54
CDY14177	Canola	extracellular	37.0	33.33
CDX76840	Canola	plasma membrane	19.82	32.85
CDY08915	Canola	plasma membrane	35.68	28.62
CDY03545	Canola	plastid	75.33	25.91
CDX91747	Canola	plasma membrane	23.35	25.0
Bra024452.1-P	Field mustard	cytosol, peroxisome, plasma membrane	95.15	22.76
CDY64741	Canola	peroxisome	84.14	20.13
CDY30294	Canola	peroxisome	84.14	20.13
CDX82608	Canola	peroxisome	83.7	20.02
AT2G18960.1	Thale cress	peroxisome	82.82	19.81
CDY14186	Canola	plasma membrane	76.21	18.42
CDY28167	Canola	peroxisome	76.65	18.35
CDY56511	Canola	peroxisome	70.93	17.95
CDY30730	Canola	plasma membrane	61.23	17.66
CDY39956	Canola	plasma membrane	64.32	16.96
CDX87330	Canola	plasma membrane	63.88	16.84
PGSC0003DMT400010497	Potato	cytosol, peroxisome, plasma membrane	69.6	16.6
CDX76810	Canola	plasma membrane	61.23	16.28
CDY67153	Canola	peroxisome	65.2	16.12
CDX67957	Canola	peroxisome	63.0	15.98
TraesCS2B01G530500.1	Wheat	peroxisome	66.52	15.88
TraesCS2D01G503000.1	Wheat	golgi, plastid, unclear	66.52	15.88
EES11577	Sorghum	cytosol, peroxisome, plasma membrane	65.64	15.67
CDY47940	Canola	peroxisome	65.64	15.67
CDY42259	Canola	peroxisome	65.64	15.67
CDY25913	Canola	peroxisome	65.64	15.65
CDY38294	Canola	peroxisome	65.64	15.65
Os04t0656100-01	Rice	plasma membrane	64.76	15.46
CDX93092	Canola	peroxisome	64.32	15.38
CDY50939	Canola	peroxisome	64.32	15.38
TraesCS2A01G502400.1	Wheat	golgi	64.32	15.35
CDY51650	Canola	plasma membrane	61.23	15.27
CDY51651	Canola	plasma membrane	60.35	15.24
CDY45897	Canola	extracellular	6.17	15.22
CDX72217	Canola	peroxisome	60.79	15.16
CDX72218	Canola	peroxisome	60.35	15.04
CDX79363	Canola	plasma membrane	56.39	14.81
HORVU2Hr1G111640.2	Barley	plasma membrane	65.64	14.75
CDY34767	Canola	peroxisome	60.79	14.44
CDY45757	Canola	peroxisome	60.79	14.35
CDX98252	Canola	nucleus	4.85	13.92
CDX71820	Canola	peroxisome	53.3	12.59
CDY41176	Canola	peroxisome	53.3	12.59
CDY56993	Canola	peroxisome	49.34	11.83
CDX83917	Canola	plasma membrane	46.7	11.23
CDX96779	Canola	plasma membrane	46.7	11.23
CDY42692	Canola	peroxisome	46.26	11.19
CDY13569	Canola	cytosol	1.76	4.65
CDY28277	Canola	cytosol	1.76	3.7
CDY33128	Canola	plastid	2.2	2.26
CDX76809	Canola	cytosol, nucleus, peroxisome	0.88	1.31
CDY62140	Canola	peroxisome	0.44	0.15
CDY31231	Canola	plastid	0.0	0.0
CDY50206	Canola	endoplasmic reticulum	0.0	0.0
CDY09377	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.0	0.0
CDY26756	Canola	mitochondrion	0.0	0.0
CDY69631	Canola	cytosol, peroxisome, plasma membrane	0.0	0.0
CDY67606	Canola	peroxisome	0.0	0.0
CDY24136	Canola	mitochondrion	0.0	0.0
CDY45679	Canola	cytosol, golgi, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY62141	EnsemblPlantsGene:GSBRNA2T00035994001	Gene3D:1.20.1110.10	GO:A0A078J9H3	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:ATPase_P-typ_TM_dom_sf	ncoils:Coil	PANTHER:PTHR42861	PANTHER:PTHR42861:SF19	ProteinID:CDY62141
ProteinID:CDY62141.1	SUPFAM:SSF81665	TMHMM:TMhelix	UniParc:UPI0004EE34E4	UniProt:A0A078J9H3	MapMan:35.1

Description

BnaCnng39310DBnaCnng39310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9H3]

Coordinates

chrLK034104:+:7576..8968

Molecular Weight (calculated)

25947.3 Da

IEP (calculated)

9.742

GRAVY (calculated)

-0.012

Length

227 amino acids

Sequence
(BLAST)

001: MSVIFFWVIH KTDFCSDKFG VRSIRDNNDE LMFAVHPQVS NISQALIFVT RSRSWSFVER PGALLMIAFV IAQLIATLIA VYANWTFAKV KGIGWGWAAV
101: IWVYSILTYI PQDILKFAIR YILSGKAWVS MFDKRTALTT MSDYGAGERQ AEWATEQRTQ HGLQTRQEVN VFPENGGYRE LSQIVEQAKK RAEIARLREI
201: HTFKGHVESV AKLKGLDIDT SGHHYTL

Best Arabidopsis Sequence Match ( AT2G18960.1 )
(BLAST)

001: MSGLEDIKNE TVDLEKIPIE EVFQQLKCTR EGLTTQEGED RIVIFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAALMA IALANGDNRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TSIGNFCICS IAIGIAIEIV VMYPIQHRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRVEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDSDGNWHR VSKGAPEQIL DLANARPDLR KKVLSCIDKY AERGLRSLAV ARQVVPEKTK ESPGGPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSAALLGT DKDSNIASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLKEIF ATGIVLGGYQ AIMSVIFFWA AHKTDFFSDK FGVRSIRDNN DELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FVIAQLVATL
801: IAVYADWTFA KVKGIGWGWA GVIWIYSIVT YFPQDILKFA IRYILSGKAW ASLFDNRTAF TTKKDYGIGE REAQWAQAQR TLHGLQPKED VNIFPEKGSY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVAKLKGLDI DTAGHHYTV

Arabidopsis Description

AHA1Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VSN5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.