Factsheet for PGSC0003DMT400010497

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
plastid 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010497
PGSC0003DMT400032400

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18960.1	PGSC0003DMT400010497	AT2G18960.1	12182706
AT2G18960.1	PGSC0003DMT400032400	AT4G27500.1	12182706
AT2G18960.1	PGSC0003DMT400032400	AT4G27500.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g017780.2.1	Tomato	nucleus, unclear	98.74	97.41
AT2G18960.1	Thale cress	peroxisome	88.87	89.15
CDY64741	Canola	peroxisome	88.45	88.72
CDY30294	Canola	peroxisome	88.45	88.72
CDX82608	Canola	peroxisome	88.45	88.72
Bra010298.1-P	Field mustard	cytosol, peroxisome, plasma membrane	88.13	88.6
Bra038835.1-P	Field mustard	cytosol, peroxisome, plasma membrane	88.13	88.41
Os04t0656100-01	Rice	plasma membrane	88.24	88.33
Bra010299.1-P	Field mustard	plasma membrane	87.08	88.29
CDY14186	Canola	plasma membrane	87.08	88.29
EES11577	Sorghum	cytosol, peroxisome, plasma membrane	88.13	88.22
CDY03545	Canola	plastid	61.03	88.03
TraesCS2B01G530500.1	Wheat	peroxisome	87.61	87.7
TraesCS2D01G503000.1	Wheat	golgi, plastid, unclear	87.61	87.7
TraesCS2A01G502400.1	Wheat	golgi	87.18	87.28
Bra011172.1-P	Field mustard	peroxisome	86.03	86.39
CDY28167	Canola	peroxisome	86.03	86.39
CDY67153	Canola	peroxisome	83.09	86.17
AT5G57350.1	Thale cress	peroxisome	85.82	86.09
CDY51650	Canola	plasma membrane	82.25	86.04
AT4G30190.2	Thale cress	peroxisome	88.66	86.03
CDY51651	Canola	plasma membrane	81.2	85.98
CDX72218	Canola	peroxisome	82.25	85.95
Bra024100.1-P	Field mustard	cytosol, peroxisome, plasma membrane	85.4	85.76
Bra024101.1-P	Field mustard	plasma membrane	81.51	85.75
CDX72217	Canola	peroxisome	81.93	85.71
CDY42259	Canola	peroxisome	85.29	85.38
CDY47940	Canola	peroxisome	85.29	85.38
Bra002733.1-P	Field mustard	cytosol, peroxisome, plasma membrane	85.19	85.19
CDY25913	Canola	peroxisome	85.19	85.19
CDY38294	Canola	peroxisome	84.98	84.98
Zm00001d026490_P010	Maize	peroxisome	87.5	84.83
Bra020447.1-P	Field mustard	plasma membrane	61.13	84.72
Bra024452.1-P	Field mustard	cytosol, peroxisome, plasma membrane	84.24	84.51
PGSC0003DMT400036636	Potato	plasma membrane	60.61	83.99
HORVU2Hr1G111640.2	Barley	plasma membrane	87.5	82.48
PGSC0003DMT400030913	Potato	cytosol, peroxisome, plasma membrane	81.93	82.02
CDY62140	Canola	peroxisome	59.03	81.92
PGSC0003DMT400083041	Potato	cytosol, peroxisome, plasma membrane	82.04	81.69
VIT_19s0090g00010.t01	Wine grape	mitochondrion	5.99	81.43
KRH16408	Soybean	cytosol, extracellular, plasma membrane	16.07	81.38
PGSC0003DMT400020414	Potato	plasma membrane	78.89	81.28
CDY56511	Canola	peroxisome	76.16	80.83
PGSC0003DMT400065168	Potato	cytosol, peroxisome, plasma membrane	81.51	78.38
Zm00001d002006_P013	Maize	peroxisome	60.61	75.52
PGSC0003DMT400088585	Potato	cytosol, peroxisome, plasma membrane	76.26	75.16
CDY45897	Canola	extracellular	7.25	75.0
CDY62141	Canola	cytosol, endoplasmic reticulum, plasma membrane	16.6	69.6
CDY14177	Canola	extracellular	18.28	69.05
AT4G11730.1	Thale cress	peroxisome	55.67	65.19
GSMUA_Achr7P19560_001	Banana	nucleus	15.65	59.6
VIT_02s0012g00950.t01	Wine grape	plastid	14.18	57.45
Zm00001d027407_P003	Maize	cytosol	7.04	52.76
PGSC0003DMT400003602	Potato	peroxisome	46.43	48.46
CDY28277	Canola	cytosol	5.46	48.15
Zm00001d027603_P001	Maize	plasma membrane	14.81	38.84
VIT_01s0011g01030.t01	Wine grape	peroxisome, plasma membrane, plastid	23.0	38.69
Zm00001d045237_P004	Maize	cytosol	4.94	34.81
CDY13569	Canola	cytosol	3.05	33.72
Zm00001d013197_P002	Maize	plastid	17.96	30.32
Zm00001d033487_P001	Maize	plastid	17.44	29.02
CDY33128	Canola	plastid	6.72	28.96

Protein Annotations

KEGG:00190+3.6.3.6	Gene3D:1.20.1110.10	MapMan:24.1.2.3.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ProteinID:CAA54045	ProteinID:CAA54045.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006139	GO:GO:0006754
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0008553	GO:GO:0009058
GO:GO:0009987	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0046872	GO:GO:0120029	GO:GO:1902600	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
InterPro:IPR023299	UniProt:M0ZY56	InterPro:P-type_ATPase_IIIA	PFAM:PF00122	PFAM:PF00690	PFAM:PF00702
EnsemblPlantsGene:PGSC0003DMG400004101	PGSC:PGSC0003DMG400004101	EnsemblPlants:PGSC0003DMT400010497	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154
PANTHER:PTHR42861	PANTHER:PTHR42861:SF41	InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653
SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01647	TMHMM:TMhelix	UniParc:UPI0002950C0F	EMBL:X76535
SEG:seg	:	:	:	:	:

Description

H(+)-transporting ATPase [Source:PGSC_GENE;Acc:PGSC0003DMG400004101]

Coordinates

chr7:+:10832288..10839563

Molecular Weight (calculated)

105020.0 Da

IEP (calculated)

6.726

GRAVY (calculated)

0.052

Length

952 amino acids

Sequence
(BLAST)

001: MAKAISLEEI KNETVDLEKI PIEEVFEQLK CSREGLTSDE GANRLQIFGP NKLEEKKESK ILKFLGFMWN PLSWVMEAAA IMAIALANGN GKPPDWQDFV
101: GIVCLLVINS TISFIEENNA GNAAAALMAG LAPKTKVLRD GRWSEQEAAI LVPGDIISVK LGDIVPADAR LLEGDPLKID QSALTGESLP VTKNPGDEVF
201: SGSTCKQGEL EAVVIATGVH TFFGKAAHLV DSTNNVGHFQ KVLTAIGNFC ICSIAVGMLI EIIVMYPIQH RKYRDGIDNL LVLLIGGIPI AMPTVLSVTM
301: AIGSHRLSQQ GAITKRMTAI EEMAGMDVLC SDKTGTLTLN KLSVDKTLVE VFVKGVDKEY VLLLAARASR VENQDAIDAC MVGMLADPKE ARAGIREVHF
401: LPFNPVDKRT ALTYIDNNGN WHRASKGAPE QILDLCNCKE DVRRKVHSMI DKYAERGLRS LAVARQEVPE KSKESAGGPW QFVGLLPLFD PPRHDSAETI
501: RRALNLGVNV KMITGDQLAI AKETGRRLGM GTNMYPSASL LGQDKDSSIA SLPVEELIEK ADGFAGVFPE HKYEIVKKLQ ERKHIVGMTG DGVNDAPALK
601: KADIGIAVAD ATDAARGASD IVLTEPGLSV IISAVLTSRA IFQRMKNYTI YAVSITIRIV FGFMLIALIW KYDFSAFMVL IIAILNDGTI MTISKDRVKP
701: SPMPDSWKLN EIFATGVVLG GYQALMTVLF FWAMHDTKFF SDKFGVKDIR ESDEEMMSAL YLQVSIISQA LIFVTRSRSW SFVERPGALL MIAFLIAQLV
801: ATLIAVYADW TFARVKGCGW GWAGVIWIFS IVTYFPLDIM KFAIRYILSG KAWNNLLDNK TAFTTKKDYG KEEREAQWAL AQRTLHGLQP PEASNLFNEK
901: NSYRELSEIA EQAKRRAEMA RLRELHTLKG HVESVVKLKG LDIETIQQHY TV

Best Arabidopsis Sequence Match ( AT2G18960.1 )
(BLAST)

001: MSGLEDIKNE TVDLEKIPIE EVFQQLKCTR EGLTTQEGED RIVIFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAALMA IALANGDNRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TSIGNFCICS IAIGIAIEIV VMYPIQHRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRVEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDSDGNWHR VSKGAPEQIL DLANARPDLR KKVLSCIDKY AERGLRSLAV ARQVVPEKTK ESPGGPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSAALLGT DKDSNIASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLKEIF ATGIVLGGYQ AIMSVIFFWA AHKTDFFSDK FGVRSIRDNN DELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FVIAQLVATL
801: IAVYADWTFA KVKGIGWGWA GVIWIYSIVT YFPQDILKFA IRYILSGKAW ASLFDNRTAF TTKKDYGIGE REAQWAQAQR TLHGLQPKED VNIFPEKGSY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVAKLKGLDI DTAGHHYTV

Arabidopsis Description

AHA1Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VSN5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.