Factsheet for VIT_01s0011g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

plastid 4
peroxisome 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g01030.t01
VIT_02s0012g00950.t01
VIT_19s0014g02640.t01
VIT_19s0090g00010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18960.1	VIT_01s0011g01030.t01	AT2G18960.1	12182706
AT2G18960.1	VIT_02s0012g00950.t01	AT2G18960.1	12182706
AT2G18960.1	VIT_19s0090g00010.t01	AT2G18960.1	12182706
AT2G18960.1	VIT_19s0014g02640.t01	AT4G27500.1	12182706
AT2G18960.1	VIT_19s0014g02640.t01	AT4G27500.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g00010.t01	Wine grape	mitochondrion	10.6	85.71
VIT_02s0012g00950.t01	Wine grape	plastid	30.92	74.47
KRH16408	Soybean	cytosol, extracellular, plasma membrane	18.9	56.91
Solyc02g011700.1.1	Tomato	extracellular	6.01	30.63
VIT_00s2844g00010.t01	Wine grape	cytosol	8.48	30.0
VIT_09s0002g02260.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.52	24.53
VIT_11s0149g00210.t01	Wine grape	extracellular	39.58	23.53
Bra024101.1-P	Field mustard	plasma membrane	37.46	23.43
VIT_04s0008g02460.t01	Wine grape	cytosol, peroxisome, plasma membrane	39.22	23.27
PGSC0003DMT400010497	Potato	cytosol, peroxisome, plasma membrane	38.69	23.0
VIT_11s0052g00620.t01	Wine grape	extracellular	38.52	22.85
EES11577	Sorghum	cytosol, peroxisome, plasma membrane	38.34	22.82
Bra010299.1-P	Field mustard	plasma membrane	37.81	22.79
Os04t0656100-01	Rice	plasma membrane	38.16	22.71
AT2G18960.1	Thale cress	peroxisome	37.99	22.66
Bra038835.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.99	22.66
TraesCS2A01G502400.1	Wheat	golgi	37.99	22.61
TraesCS2B01G530500.1	Wheat	peroxisome	37.99	22.61
TraesCS2D01G503000.1	Wheat	golgi, plastid, unclear	37.99	22.61
Bra010298.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.81	22.6
VIT_17s0000g05540.t01	Wine grape	extracellular	38.16	22.59
VIT_14s0066g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	37.99	22.51
Bra024100.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.46	22.36
VIT_15s0021g01660.t01	Wine grape	cytosol, peroxisome, plasma membrane	37.81	22.34
Bra011172.1-P	Field mustard	peroxisome	37.28	22.26
AT5G57350.1	Thale cress	peroxisome	37.28	22.23
AT4G30190.2	Thale cress	peroxisome	38.34	22.12
VIT_09s0002g00130.t01	Wine grape	plasma membrane	37.1	22.06
Bra002733.1-P	Field mustard	cytosol, peroxisome, plasma membrane	36.04	21.43
Bra024452.1-P	Field mustard	cytosol, peroxisome, plasma membrane	35.87	21.39
HORVU2Hr1G111640.2	Barley	plasma membrane	37.99	21.29
Bra020447.1-P	Field mustard	plasma membrane	25.62	21.11
VIT_02s0025g03330.t01	Wine grape	peroxisome	31.1	20.28
AT4G11730.1	Thale cress	peroxisome	28.62	19.93
VIT_00s0477g00070.t01	Wine grape	plastid	10.78	10.89
VIT_02s0488g00010.t01	Wine grape	cytosol	3.53	10.75
VIT_02s0025g03360.t01	Wine grape	peroxisome	2.65	9.87
VIT_00s2642g00010.t01	Wine grape	cytosol, peroxisome	4.06	9.35
VIT_15s0048g00170.t01	Wine grape	cytosol, mitochondrion	1.41	7.27
VIT_15s0048g00140.t01	Wine grape	cytosol	3.53	6.23
VIT_00s0760g00010.t01	Wine grape	endoplasmic reticulum, plasma membrane	1.59	5.36
VIT_07s0191g00260.t01	Wine grape	cytosol, plasma membrane	3.0	4.56
CDY28277	Canola	cytosol	0.71	3.7
Zm00001d027603_P001	Maize	plasma membrane	1.59	2.48
CDY13569	Canola	cytosol	0.35	2.33

Protein Annotations

Gene3D:1.20.1110.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	ProteinID:CCB51043
ProteinID:CCB51043.1	UniProt:F6HEY3	EMBL:FN595752	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase
PFAM:PF00122	PFAM:PF00931	ScanProsite:PS00154	PANTHER:PTHR42861	PANTHER:PTHR42861:SF40	InterPro:P_typ_ATPase
SUPFAM:SSF52540	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TMHMM:TMhelix	UniParc:UPI0002107F42	ArrayExpress:VIT_01s0011g01030
EnsemblPlantsGene:VIT_01s0011g01030	EnsemblPlants:VIT_01s0011g01030.t01	:	:	:	:

Description

No Description!

Coordinates

chr1:+:910536..918449

Molecular Weight (calculated)

63178.6 Da

IEP (calculated)

10.032

GRAVY (calculated)

-0.138

Length

566 amino acids

Sequence
(BLAST)

001: MQARLPITSQ PSSYKINLYT HGKISDSLIK QPTNPHIVNH PKIISYPSPC KNNPGLKLLT LYLVGSERGC AKLEKPRMER IGSYVLFAIL QPADDQCGTH
101: NRSQELPNFT RFRLCILDPT QTDPLTCSPP PTYFLNRQTA SKAVLKPPAA KRLRHHQSTS PTIPKFLSLL LPDVKAPPSM HLMKAAHLVD NTNHQGHFQK
201: VLTAIGNFCI YSIAFGIIVE IVVMYPIQRC KYRDGINNLL VFLIGGIPIA MPTVLSVTMA IGSHRLSKQG AITKRMTAIE KMAGMDVLCS DKTGTLTFNK
301: LIVDKSMIEI FSKDVDSDVV ILLAARASRV ENQDAIDACI VRMLANPKRK IVLRATHFSH SGIKKLSPEV ALQTGESKGP IFLCHSQSSQ GSYAKLPSNI
401: KVKRKSMNPD LAGGMADRAE RYDNRFNVWI QEVRTEAYAI EDVLDLFRLH WDQESVWRHL KMWHSISNLI QDINTRLAII SAETNTYLNV RVVPLIPGRG
501: NNTVGIDKPK RKLVSWALES NQKLKVMFMV GMAGLGKTTL GHSVYEEVKM CGNPLDLPCQ MVTTIE

Best Arabidopsis Sequence Match ( AT1G80660.1 )
(BLAST)

001: MAGNKDSSWD DIKNEGIDLE KIPIEEVLTQ LRCTREGLTS DEGQTRLEIF GPNKLEEKKE NKVLKFLGFM WNPLSWVMEL AAIMAIALAN GGGRPPDWQD
101: FVGITVLLII NSTISFIEEN NAGNAAAALM AGLAPKTKVL RDGKWSEQEA AILVPGDIIS IKLGDIVPAD GRLLDGDPLK IDQSALTGES LPVTKHPGQE
201: VYSGSTCKQG ELEAVVIATG VHTFFGKAAH LVDSTNQEGH FQKVLTAIGN FCICSIAIGM LIEIVVMYPI QKRAYRDGID NLLVLLIGGI PIAMPTVLSV
301: TMAIGSHRLS QQGAITKRMT AIEEMAGMDV LCSDKTGTLT LNKLTVDKSM VEVFVKDLDK DQLLVNAARA SRVENQDAID ACIVGMLGDP REAREGITEV
401: HFFPFNPVDK RTAITYIDAN GNWHRVSKGA PEQIIELCNL REDASKRAHD IIDKFADRGL RSLAVGRQTV SEKDKNSPGE PWQFLGLLPL FDPPRHDSAE
501: TIRRALDLGV NVKMITGDQL AIGKETGRRL GMGTNMYPSS ALLGQDKDES IASLPVDELI EKADGFAGVF PEHKYEIVKR LQEMKHICGM TGDGVNDAPA
601: LKRADIGIAV ADATDAARSA SDIVLTEPGL SVIVSAVLTS RAIFQRMKNY TIYAVSITIR IVMGFMLLAL IWKFDFSPFM VLIVAILNDG TIMTISKDRV
701: KPSPLPDSWK LKEIFATGVV LGTYLAVMTV VFFWAAESTD FFSAKFGVRS ISGNPHELTA AVYLQVSIVS QALIFVTRSR SWSYVERPGF WLISAFFMAQ
801: LIATLIAVYA NWNFARIRGI GWGWAGVIWL YSIVFYIPLD ILKFIIRYSL SGRAWDNVIE NKTAFTSKKD YGKGEREAQW AQAQRTLHGL QPAQTSDMFN
901: DKSTYRELSE IADQAKRRAE VARLRERHTL KGHVESVVKQ KGLDIEAIQQ HYTL

Arabidopsis Description

AHA9ATPase 9, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:Q42556]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.