Factsheet for VIT_19s0090g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g01030.t01
VIT_02s0012g00950.t01
VIT_19s0014g02640.t01
VIT_19s0090g00010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18960.1	VIT_01s0011g01030.t01	AT2G18960.1	12182706
AT2G18960.1	VIT_02s0012g00950.t01	AT2G18960.1	12182706
AT2G18960.1	VIT_19s0090g00010.t01	AT2G18960.1	12182706
AT2G18960.1	VIT_19s0014g02640.t01	AT4G27500.1	12182706
AT2G18960.1	VIT_19s0014g02640.t01	AT4G27500.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g00950.t01	Wine grape	plastid	91.43	27.23
KRH16408	Soybean	cytosol, extracellular, plasma membrane	71.43	26.6
Solyc02g011700.1.1	Tomato	extracellular	28.57	18.02
VIT_01s0011g01030.t01	Wine grape	peroxisome, plasma membrane, plastid	85.71	10.6
Bra020447.1-P	Field mustard	plasma membrane	81.43	8.3
VIT_09s0002g02260.t01	Wine grape	cytosol, peroxisome, plasma membrane	87.14	6.37
Bra024101.1-P	Field mustard	plasma membrane	80.0	6.19
Bra010299.1-P	Field mustard	plasma membrane	82.86	6.18
Bra010298.1-P	Field mustard	cytosol, peroxisome, plasma membrane	82.86	6.12
Bra038835.1-P	Field mustard	cytosol, peroxisome, plasma membrane	82.86	6.11
AT2G18960.1	Thale cress	peroxisome	82.86	6.11
AT5G57350.1	Thale cress	peroxisome	81.43	6.01
Bra002733.1-P	Field mustard	cytosol, peroxisome, plasma membrane	81.43	5.99
VIT_11s0149g00210.t01	Wine grape	extracellular	81.43	5.99
PGSC0003DMT400010497	Potato	cytosol, peroxisome, plasma membrane	81.43	5.99
VIT_04s0008g02460.t01	Wine grape	cytosol, peroxisome, plasma membrane	81.43	5.97
VIT_11s0052g00620.t01	Wine grape	extracellular	81.43	5.97
AT4G30190.2	Thale cress	peroxisome	82.86	5.91
Bra024100.1-P	Field mustard	cytosol, peroxisome, plasma membrane	80.0	5.91
Bra011172.1-P	Field mustard	peroxisome	80.0	5.91
Bra024452.1-P	Field mustard	cytosol, peroxisome, plasma membrane	78.57	5.8
VIT_14s0066g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	78.57	5.76
VIT_17s0000g05540.t01	Wine grape	extracellular	78.57	5.75
EES11577	Sorghum	cytosol, peroxisome, plasma membrane	77.14	5.68
TraesCS2A01G502400.1	Wheat	golgi	77.14	5.68
TraesCS2B01G530500.1	Wheat	peroxisome	77.14	5.68
TraesCS2D01G503000.1	Wheat	golgi, plastid, unclear	77.14	5.68
VIT_09s0002g00130.t01	Wine grape	plasma membrane	77.14	5.67
Os04t0656100-01	Rice	plasma membrane	75.71	5.57
VIT_15s0021g01660.t01	Wine grape	cytosol, peroxisome, plasma membrane	75.71	5.53
HORVU2Hr1G111640.2	Barley	plasma membrane	77.14	5.35
AT4G11730.1	Thale cress	peroxisome	57.14	4.92
VIT_02s0025g03330.t01	Wine grape	peroxisome	54.29	4.38
VIT_00s0477g00070.t01	Wine grape	plastid	18.57	2.32
VIT_02s0025g03360.t01	Wine grape	peroxisome	4.29	1.97
VIT_00s2844g00010.t01	Wine grape	cytosol	1.43	0.62
VIT_15s0048g00140.t01	Wine grape	cytosol	2.86	0.62
VIT_00s2642g00010.t01	Wine grape	cytosol, peroxisome	1.43	0.41
VIT_02s0488g00010.t01	Wine grape	cytosol	0.0	0.0
VIT_07s0191g00260.t01	Wine grape	cytosol, plasma membrane	0.0	0.0
VIT_00s0760g00010.t01	Wine grape	endoplasmic reticulum, plasma membrane	0.0	0.0
CDY28277	Canola	cytosol	0.0	0.0
VIT_15s0048g00170.t01	Wine grape	cytosol, mitochondrion	0.0	0.0
CDY13569	Canola	cytosol	0.0	0.0
Zm00001d027603_P001	Maize	plasma membrane	0.0	0.0

Protein Annotations

ArrayExpress:VIT_19s0090g00010	EMBL:FN595751	EnsemblPlants:VIT_19s0090g00010.t01	EnsemblPlantsGene:VIT_19s0090g00010	Gene3D:1.20.1110.10	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:ATPase_P-typ_TM_dom_sf	PANTHER:PTHR42861	PANTHER:PTHR42861:SF40	ProteinID:CCB50636
ProteinID:CCB50636.1	SUPFAM:SSF81665	TMHMM:TMhelix	UniParc:UPI00021098A0	UniProt:F6HEN1	MapMan:35.1

Description

No Description!

Coordinates

chr19:+:6218196..6218706

Molecular Weight (calculated)

7816.0 Da

IEP (calculated)

11.476

GRAVY (calculated)

0.126

Length

70 amino acids

Sequence
(BLAST)

1: MVMMYPIQRR KYRDGINNLS VFLIGRIPIA MPTVLSVTMA IGSPRLSKQG ATTKRMTAIE EMAGMDVSLR

Best Arabidopsis Sequence Match ( AT4G30190.2 )
(BLAST)

001: MSSLEDIKNE TVDLEKIPIE EVFQQLKCSR EGLTTQEGED RIQIFGPNKL EEKKESKLLK FLGFMWNPLS WVMEMAAIMA IALANGDGRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TAIGNFCICS IAIGMVIEII VMYPIQRRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRVEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDGSGNWHR VSKGAPEQIL ELAKASNDLS KKVLSIIDKY AERGLRSLAV ARQVVPEKTK ESPGAPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSSALLGT HKDANLASIP VEELIEKADG FAGVFPGYNL LIYCLDYKPH YMFIAKVVML VLSFVFFIAE
601: HKYEIVKKLQ ERKHIVGMTG DGVNDAPALK KADIGIAVAD ATDAARGASD IVLTEPGLSV IISAVLTSRA IFQRMKNYTI YAVSITIRIV FGFMLIALIW
701: EFDFSAFMVL IIAILNDGTI MTISKDRVKP SPTPDSWKLK EIFATGVVLG GYQAIMTVIF FWAAHKTDFF SDTFGVRSIR DNNHELMGAV YLQVSIISQA
801: LIFVTRSRSW SFVERPGALL MIAFLIAQLI ATLIAVYANW EFAKIRGIGW GWAGVIWLYS IVTYFPLDVF KFAIRYILSG KAWLNLFENK TAFTMKKDYG
901: KEEREAQWAL AQRTLHGLQP KEAVNIFPEK GSYRELSEIA EQAKRRAEIA RLRELHTLKG HVESVVKLKG LDIETPSHYT V

Arabidopsis Description

HA2Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:F4JPJ7]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.