Factsheet for Solyc02g011700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 2
extracellular 5
plasma membrane 4
golgi 3
endoplasmic reticulum 3
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g011700.1.1
Solyc07g063100.2.1
Solyc12g013860.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18960.1	Solyc02g011700.1.1	AT2G18960.1	12182706
AT2G18960.1	Solyc07g063100.2.1	AT4G27500.1	12182706
AT2G18960.1	Solyc12g013860.1.1	AT4G27500.1	12182706
AT2G18960.1	Solyc07g063100.2.1	AT4G27500.1	16279950
AT2G18960.1	Solyc12g013860.1.1	AT4G27500.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g00010.t01	Wine grape	mitochondrion	18.02	28.57
Solyc07g005040.2.1	Tomato	cytosol, plasma membrane	46.85	13.3
KRH16408	Soybean	cytosol, extracellular, plasma membrane	21.62	12.77
VIT_02s0012g00950.t01	Wine grape	plastid	27.03	12.77
VIT_01s0011g01030.t01	Wine grape	peroxisome, plasma membrane, plastid	30.63	6.01
Bra024101.1-P	Field mustard	plasma membrane	47.75	5.86
TraesCS2B01G530500.1	Wheat	peroxisome	49.55	5.78
TraesCS2A01G502400.1	Wheat	golgi	49.55	5.78
TraesCS2D01G503000.1	Wheat	golgi, plastid, unclear	49.55	5.78
Os04t0656100-01	Rice	plasma membrane	49.55	5.78
Bra024100.1-P	Field mustard	cytosol, peroxisome, plasma membrane	48.65	5.7
Bra011172.1-P	Field mustard	peroxisome	48.65	5.7
Bra002733.1-P	Field mustard	cytosol, peroxisome, plasma membrane	48.65	5.67
Bra010299.1-P	Field mustard	plasma membrane	47.75	5.64
Solyc12g010360.1.1	Tomato	plasma membrane	46.85	5.63
Bra010298.1-P	Field mustard	cytosol, peroxisome, plasma membrane	47.75	5.6
Bra038835.1-P	Field mustard	cytosol, peroxisome, plasma membrane	47.75	5.58
AT5G57350.1	Thale cress	peroxisome	47.75	5.58
EES11577	Sorghum	cytosol, peroxisome, plasma membrane	47.75	5.57
Bra024452.1-P	Field mustard	cytosol, peroxisome, plasma membrane	46.85	5.48
Solyc03g113400.2.1	Tomato	nucleus	46.85	5.44
Solyc06g071100.2.1	Tomato	nucleus, plastid	46.85	5.44
AT4G30190.2	Thale cress	peroxisome	47.75	5.4
AT2G18960.1	Thale cress	peroxisome	45.95	5.37
HORVU2Hr1G111640.2	Barley	plasma membrane	48.65	5.35
Solyc03g117150.2.1	Tomato	unclear	45.95	5.35
Solyc07g017780.2.1	Tomato	nucleus, unclear	45.95	5.28
Solyc08g078200.1.1	Tomato	plastid	44.14	5.07
AT4G11730.1	Thale cress	peroxisome	36.04	4.92
Bra020447.1-P	Field mustard	plasma membrane	27.03	4.37
Solyc02g088060.1.1	Tomato	cytosol	9.01	3.31
Zm00001d027407_P003	Maize	cytosol	1.8	1.57
CDY28277	Canola	cytosol	0.0	0.0
CDY13569	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc02g011700.1.1	EnsemblPlantsGene:Solyc02g011700.1	Gene3D:1.20.1110.10	InterPro:ATPase_P-typ_TM_dom_sf	PANTHER:PTHR42861	PANTHER:PTHR42861:SF41
SignalP:SignalP-TM	SUPFAM:SSF81665	UniParc:UPI0002768065	UniProt:K4B4G9	MapMan:35.1	:

Description

No Description!

Coordinates

chr2:+:13575509..13576276

Molecular Weight (calculated)

12139.0 Da

IEP (calculated)

5.035

GRAVY (calculated)

0.304

Length

111 amino acids

Sequence
(BLAST)

001: MWNHLSWVIA KAAIMVIALA NRDGEPPNWK DFVCIVCLLV INSTIIFTEE NNARNSVVAL MDGLAPKMTV FRDGVGVNNK LLSQLGGITK RMSVIEEMDG
101: MDVLCSDKTG A

Best Arabidopsis Sequence Match ( AT2G07560.1 )
(BLAST)

001: MAADISWDEI KKENVDLEKI PVDEVFQQLK CSREGLSSEE GRNRLQIFGA NKLEEKVENK FLKFLGFMWN PLSWVMEAAA IMAIVLANGG GRPPDWQDFV
101: GITCLLIINS TISFIEENNA GNAAAALMAN LAPKTKVLRD GRWGEQEAAI LVPGDLISIK LGDIVPADAR LLEGDPLKID QSALTGESLP ATKHQGDEVF
201: SGSTCKQGEI EAVVIATGVH TFFGKAAHLV DSTNNVGHFQ KVLTAIGNFC ICSIGIGMLI EIIIMYPIQH RKYRDGIDNL LVLLIGGIPI AMPTVLSVTM
301: AIGSHRLSQQ GAITKRMTAI EEMAGMDVLC SDKTGTLTLN KLTVDKNLIE VFSKDVDKDY VILLSARASR VENQDAIDTS IVNMLGDPKE ARAGITEVHF
401: LPFNPVEKRT AITYIDTNGE WHRCSKGAPE QIIELCDLKG ETKRRAHEII DKFAERGLRS LGVARQRVPE KDKESAGTPW EFVGLLPLFD PPRHDSAETI
501: RRALDLGVNV KMITGDQLAI GKETGRRLGM GTNMYPSSSL LENKDDTTGG VPVDELIEKA DGFAGVFPEH KYEIVRKLQE RKHIVGMTGD GVNDAPALKK
601: ADIGIAVDDA TDAARSASDI VLTEPGLSVI VSAVLTSRAI FQRMKNYTIY AVSITIRIVL GFMLVALIWE FDFSPFMVLI IAILNDGTIM TISKDRVKPS
701: PIPDSWKLKE IFATGVVLGT YMALVTVVFF WLAHDTTFFS DKFGVRSLQG KDEELIAVLY LQVSIISQAL IFVTRSRSWS FVERPGLLLL IAFFVAQLIA
801: TLIATYAHWE FARIKGCGWG WCGVIWIYSI VTYIPLDILK FITRYTLSGK AWNNMIENRT AFTTKKDYGR GEREAQWALA QRTLHGLKPP ESMFEDTATY
901: TELSEIAEQA KKRAEVARLR EVHTLKGHVE SVVKLKGLDI DNLNQHYTV

Arabidopsis Description

AHA6ATPase 6, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:Q9SH76]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.