Factsheet for Solyc03g113400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
plastid 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071100.2.1	Tomato	nucleus, plastid	96.34	96.34
PGSC0003DMT400065168	Potato	cytosol, peroxisome, plasma membrane	99.48	96.06
VIT_17s0000g05540.t01	Wine grape	extracellular	93.31	93.31
KRH03407	Soybean	endoplasmic reticulum	92.15	92.25
KRH63412	Soybean	endoplasmic reticulum	92.15	92.15
KRH54497	Soybean	endoplasmic reticulum, extracellular, mitochondrion, nucleus	92.05	92.05
KRH56972	Soybean	cytosol, peroxisome, plasma membrane	91.84	91.94
AT5G62670.1	Thale cress	peroxisome	91.32	91.32
CDY45757	Canola	peroxisome	91.42	90.85
Os12t0638700-01	Rice	plasma membrane	90.8	90.8
EES16456	Sorghum	cytosol, peroxisome, plasma membrane	90.69	90.69
Zm00001d019062_P005	Maize	plasma membrane	84.2	90.65
Zm00001d041214_P003	Maize	plasma membrane	90.59	90.59
GSMUA_Achr4P22290_001	Banana	plasma membrane	89.33	90.56
GSMUA_Achr4P22300_001	Banana	plasma membrane	89.85	89.95
KXG37819	Sorghum	peroxisome	89.75	89.94
Os03t0689300-01	Rice	plasma membrane	89.85	89.85
GSMUA_Achr9P10970_001	Banana	cytosol, peroxisome, plasma membrane	89.75	89.84
TraesCS5D01G013100.2	Wheat	golgi	89.85	89.67
EER96010	Sorghum	cytosol, peroxisome, plasma membrane	89.54	89.54
Zm00001d033552_P003	Maize	peroxisome	89.33	89.52
AT3G47950.1	Thale cress	peroxisome	89.85	89.48
TraesCS4A01G283100.2	Wheat	nucleus	89.64	89.36
TraesCS5A01G004200.1	Wheat	golgi, unclear	89.54	89.35
CDY30730	Canola	plasma membrane	73.43	89.2
Os07t0191200-01	Rice	plasma membrane	89.23	89.13
TraesCS4D01G027900.1	Wheat	peroxisome	89.12	89.03
HORVU4Hr1G004820.7	Barley	peroxisome	89.33	88.77
Zm00001d021000_P008	Maize	cytosol, peroxisome, plasma membrane	43.1	88.03
TraesCS5A01G004300.2	Wheat	cytosol, peroxisome, plasma membrane	87.45	87.54
TraesCSU01G073200.3	Wheat	plasma membrane	89.64	86.57
TraesCS4A01G282900.1	Wheat	plasma membrane	77.09	85.7
HORVU5Hr1G000780.15	Barley	golgi, mitochondrion, plasma membrane	87.97	84.61
TraesCS4B01G031000.1	Wheat	plasma membrane	80.96	83.95
Solyc07g005040.2.1	Tomato	cytosol, plasma membrane	33.89	82.86
Zm00001d007775_P001	Maize	peroxisome	56.9	82.18
Solyc07g017780.2.1	Tomato	nucleus, unclear	80.86	80.1
Solyc03g117150.2.1	Tomato	unclear	79.18	79.35
Solyc08g078200.1.1	Tomato	plastid	79.6	78.78
Solyc12g010360.1.1	Tomato	plasma membrane	75.31	77.92
Bra029249.1-P	Field mustard	plastid	91.42	74.51
Solyc02g088060.1.1	Tomato	cytosol	17.68	55.96
Solyc02g011700.1.1	Tomato	extracellular	5.44	46.85

Protein Annotations

KEGG:00190+3.6.3.6	Gene3D:1.20.1110.10	MapMan:24.1.2.3.1	Gene3D:3.40.1110.10	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf
InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006139	GO:GO:0006754	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150
GO:GO:0008152	GO:GO:0008553	GO:GO:0009058	GO:GO:0009987	GO:GO:0015992	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0046872	GO:GO:0120029	GO:GO:1902600
InterPro:HAD-like_sf	InterPro:IPR023299	EMBL:M60166	InterPro:P-type_ATPase_IIIA	UniProt:P22180	PFAM:PF00122
PFAM:PF00690	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154	PANTHER:PTHR42861
PANTHER:PTHR42861:SF5	InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665
EnsemblPlantsGene:Solyc03g113400.2	EnsemblPlants:Solyc03g113400.2.1	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01647	TMHMM:TMhelix	UniParc:UPI0000131C9A
SEG:seg	:	:	:	:	:

Description

LHA1Plasma membrane ATPase 1 [Source:UniProtKB/Swiss-Prot;Acc:P22180]

Coordinates

chr3:+:63555824..63562606

Molecular Weight (calculated)

105109.0 Da

IEP (calculated)

6.843

GRAVY (calculated)

0.140

Length

956 amino acids

Sequence
(BLAST)

001: MAEKPEVLDA VLKETVDLEN IPIEEVFENL RCTREGLTAT AAQERLSIFG YNKLEEKKES KFLKFLGFMW NPLSWVMEAA AIMAIALANG GGKPPDWQDF
101: VGIITLLIIN STISFIEENN AGNAAAALMA RLAPKAKVLR DGKWDEEDAS VLVPGDIISI KLGDIIPADA RLLEGDPLKI DQSALTGESL PVTKGPGDGV
201: YSGSTCKQGE IEAVVIATGV HTFFGKAAHL VDSTNQVGHF QKVLTAIGNF CICSIAVGMI IEIIVMYPIQ HRKYRPGIDN LLVLLIGGIP IAMPTVLSVT
301: MAIGSHRLAQ QGAITKRMTA IEEMAGMDVL CSDKTGTLTL NKLTVDKALI EVFAKGIDAD TVVLMAARAS RIENQDAIDT AIVGMLADPK EARAGIREIH
401: FLPFNPTDKR TALTYLDGEG KMHRVSKGAP EQILNLAHNK SDIERRVHTV IDKFAERGLR SLGVAYQEVP EGRKESAGGP WQFIALLPLF DPPRHDSAET
501: IRRALNLGVN VKMITGDQLA IGKETGRRLG MGTNMYPSSA LLGQTKDESI AALPIDELIE KADGFAGVFP EHKYEIVKRL QARKHICGMT GDGVNDAPAL
601: KKADIGIAVD DATDAARSAS DIVLTEPGLS VIISAVLTSR AIFQRMKNYT IYAVSITIRI VLGFMLLALI WKFDFPPFMV LIIAILNDGT IMTISKDRVK
701: PSPLPDSWKL AEIFTTGVVL GGYLAMMTVI FFWAAYKTNF FPRIFGVSTL EKTATDDFRK LASAIYLQVS TISQALIFVT RSRSWSFVER PGLLLVFAFF
801: VAQLVATLIA VYANWSFAAI EGIGWGWAGV IWLYNIVTYI PLDLIKFLIR YALSGKAWDL VLEQRIAFTR KKDFGKELRE LQWAHAQRTL HGLQVPDPKI
901: FSETTNFNEL NQLAEEAKRR AEIARLRELH TLKGHVESVV KLKGLDIETI QQSYTV

Best Arabidopsis Sequence Match ( AT5G62670.1 )
(BLAST)

001: MGDKEEVLEA VLKETVDLEN VPIEEVFESL RCSREGLTTE AADERLALFG HNKLEEKKES KFLKFLGFMW NPLSWVMEAA AIMAIALANG GGKPPDWQDF
101: VGIITLLVIN STISFIEENN AGNAAAALMA RLAPKAKVLR DGRWGEQDAA ILVPGDIISI KLGDIVPADA RLLEGDPLKI DQSSLTGESL PVTKGPGDGV
201: YSGSTCKQGE LEAVVIATGV HTFFGKAAHL VDTTNHVGHF QQVLTAIGNF CICSIAVGMI IEIVVMYPIQ HRAYRPGIDN LLVLLIGGIP IAMPTVLSVT
301: MAIGSHRLSQ QGAITKRMTA IEEMAGMDVL CSDKTGTLTL NKLTVDKNLI EVFTKGVDAD TVVLMAAQAS RLENQDAIDA AIVGMLADPK EARAGVREVH
401: FLPFNPTDKR TALTYIDSDG KMHRVSKGAP EQILNLAHNR AEIERRVHAV IDKFAERGLR SLAVAYQEVP EGTKESAGGP WQFMGLMPLF DPPRHDSAET
501: IRRALNLGVN VKMITGDQLA IGKETGRRLG MGTNMYPSSA LLGQHKDESI GALPIDDLIE KADGFAGVFP EHKYEIVKRL QARKHICGMT GDGVNDAPAL
601: KKADIGIAVA DATDAARSAS DIVLTEPGLS VIISAVLTSR AIFQRMKNYT IYAVSITIRI VLGFMLLALI WKFDFPPFMV LIIAILNDGT IMTISKDRVK
701: PSPLPDSWKL SEIFATGVVF GSYMAMMTVI FFWAAYKTDF FPRTFGVSTL EKTAHDDFRK LASAIYLQVS IISQALIFVT RSRSWSYVER PGMLLVVAFI
801: LAQLVATLIA VYANWSFAAI EGIGWGWAGV IWLYNIVFYI PLDIIKFLIR YALSGRAWDL VIEQRVAFTR QKDFGKEQRE LQWAHAQRTL HGLQAPDAKM
901: FPERTHFNEL SQMAEEAKRR AEIARLRELH TLKGHVESVV RLKGLDIETI QQAYTV

Arabidopsis Description

AHA11ATPase 11, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:Q9LV11]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.