CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
plastid 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

nucleus: 21132161
endoplasmic reticulum: 23041469
extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54497	Soybean	endoplasmic reticulum, extracellular, mitochondrion, nucleus	99.37	99.37
KRH56972	Soybean	cytosol, peroxisome, plasma membrane	95.08	95.18
KRH03407	Soybean	endoplasmic reticulum	95.08	95.18
VIT_17s0000g05540.t01	Wine grape	extracellular	94.04	94.04
AT5G62670.1	Thale cress	peroxisome	92.68	92.68
Solyc06g071100.2.1	Tomato	nucleus, plastid	92.26	92.26
Solyc03g113400.2.1	Tomato	nucleus	92.15	92.15
PGSC0003DMT400083041	Potato	cytosol, peroxisome, plasma membrane	92.15	92.15
CDY45757	Canola	peroxisome	92.36	91.79
AT3G47950.1	Thale cress	peroxisome	91.84	91.46
KRH18509	Soybean	endoplasmic reticulum	84.73	91.22
GSMUA_Achr4P22290_001	Banana	plasma membrane	89.54	90.77
GSMUA_Achr4P22300_001	Banana	plasma membrane	90.17	90.26
CDY30730	Canola	plasma membrane	74.27	90.22
Zm00001d041214_P003	Maize	plasma membrane	89.96	89.96
EES16456	Sorghum	cytosol, peroxisome, plasma membrane	89.85	89.85
GSMUA_Achr9P10970_001	Banana	cytosol, peroxisome, plasma membrane	89.54	89.63
Os12t0638700-01	Rice	plasma membrane	89.54	89.54
KRG93484	Soybean	extracellular	89.02	89.02
KXG37819	Sorghum	peroxisome	88.7	88.89
PGSC0003DMT400065168	Potato	cytosol, peroxisome, plasma membrane	91.95	88.79
Zm00001d033552_P003	Maize	peroxisome	88.49	88.68
Os03t0689300-01	Rice	plasma membrane	88.6	88.6
TraesCS5D01G013100.2	Wheat	golgi	88.7	88.52
TraesCS5A01G004200.1	Wheat	golgi, unclear	88.6	88.41
Zm00001d019062_P005	Maize	plasma membrane	82.11	88.4
TraesCS4A01G283100.2	Wheat	nucleus	88.6	88.32
TraesCS4D01G027900.1	Wheat	peroxisome	88.39	88.3
Os07t0191200-01	Rice	plasma membrane	88.08	87.98
HORVU4Hr1G004820.7	Barley	peroxisome	88.39	87.84
EER96010	Sorghum	cytosol, peroxisome, plasma membrane	87.66	87.66
TraesCS5A01G004300.2	Wheat	cytosol, peroxisome, plasma membrane	86.82	86.91
Zm00001d021000_P008	Maize	cytosol, peroxisome, plasma membrane	42.26	86.32
TraesCSU01G073200.3	Wheat	plasma membrane	88.7	85.66
TraesCS4A01G282900.1	Wheat	plasma membrane	76.57	85.12
HORVU5Hr1G000780.15	Barley	golgi, mitochondrion, plasma membrane	87.03	83.7
TraesCS4B01G031000.1	Wheat	plasma membrane	80.44	83.41
Zm00001d007775_P001	Maize	peroxisome	57.22	82.63
KRH04967	Soybean	plasma membrane	82.11	82.54
KRH16128	Soybean	endoplasmic reticulum, mitochondrion, nucleus	81.69	82.12
KRH12255	Soybean	endoplasmic reticulum	81.9	81.99
KRH02845	Soybean	endoplasmic reticulum	81.38	81.64
KRH19045	Soybean	endoplasmic reticulum	80.75	81.35
KRH66539	Soybean	peroxisome, plasma membrane	80.02	81.21
KRH61927	Soybean	endoplasmic reticulum, mitochondrion	80.23	80.65
KRH52590	Soybean	cytosol, peroxisome, plasma membrane	80.23	80.65
KRH47385	Soybean	endoplasmic reticulum	79.92	80.51
KRH09668	Soybean	endoplasmic reticulum	79.81	80.4
KRH48806	Soybean	endoplasmic reticulum	80.65	80.31
KRH23631	Soybean	plasma membrane	79.6	80.19
KRH44521	Soybean	endoplasmic reticulum	79.29	79.87
KRH20096	Soybean	endoplasmic reticulum, mitochondrion	77.41	78.14
KRH03539	Soybean	endoplasmic reticulum	77.3	78.04
KRH12960	Soybean	endoplasmic reticulum	69.98	77.61
KRH37283	Soybean	plasma membrane	81.9	76.99
KRH68997	Soybean	plasma membrane	74.9	76.66
KRH16408	Soybean	cytosol, extracellular, plasma membrane	14.85	75.53
Bra029249.1-P	Field mustard	plastid	92.36	75.28
KRH16612	Soybean	peroxisome	16.63	49.07
KRH52592	Soybean	extracellular, plasma membrane	3.24	42.47
KRH16357	Soybean	cytosol	8.16	40.62
KRH43127	Soybean	plasma membrane	18.72	23.8
KRH59277	Soybean	mitochondrion	21.65	21.45

Protein Annotations

KEGG:00190+3.6.3.6	Gene3D:1.20.1110.10	EntrezGene:100818043	MapMan:24.1.2.3.1	Gene3D:3.40.1110.10	EMBL:ACUP02002684
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ncoils:Coil
EnsemblPlantsGene:GLYMA_04G174800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006139	GO:GO:0006754
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0008553	GO:GO:0009058
GO:GO:0009987	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0046872	GO:GO:0120029	GO:GO:1902600	InterPro:HAD-like_sf	UniProt:I1JWZ3	InterPro:IPR023299
EnsemblPlants:KRH63412	ProteinID:KRH63412	ProteinID:KRH63412.1	InterPro:P-type_ATPase_IIIA	PFAM:PF00122	PFAM:PF00690
PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154	PANTHER:PTHR42861	PANTHER:PTHR42861:SF5
InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR01494
TIGRFAMs:TIGR01647	TMHMM:TMhelix	UniParc:UPI000233A67D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:43654268..43660992

Molecular Weight (calculated)

105266.0 Da

IEP (calculated)

6.707

GRAVY (calculated)

0.103

Length

956 amino acids

Sequence
(BLAST)

001: MGDKSQVLEA VLKEAVDLEN IPIEEVFENL RCSKEGLSSE AAEERLVIFG HNKLEEKKES KFLKFLGFMW NPLSWVMEAA AIMAIALANG GGKPPDWQDF
101: VGIITLLLIN STISFIEENN AGNAAAALMA RLAPKAKVLR DGRWNEQDAS VLVPGDIVSI KLGDIIPADA RLLEGDPLKI DQSALTGESL PVTKGPGDGV
201: YSGSTCKQGE IEAVVIATGV HTFFGKAAHL VDTTNQVGHF QKVLTAIGNF CICSIAVGMV IEIIVMYPIQ DREYRPGIDN LLVLLIGGIP IAMPTVLSVT
301: MAIGSHRLSQ QGAITKRMTA IEEMAGMDVL CSDKTGTLTL NKLTVDKNLI EVFTKGVDAD TVVLMAAQAS RLENQDAIDT AIVGMLADPK EARLGIQEVH
401: FLPFNPTDKR TALTYIDRNG KMHRVSKGAP EQILNLAHNK SDIERRVHAV IDKFAERGLR SLAVAFQDVP DGRKESTGGP WQFIGLLPLF DPPRHDSAET
501: IRRALNLGVN VKMITGDQLA IGKETGRRLG MGTNMYPSSA LLGQDKDESI SALPIDELIE KADGFAGVFP EHKYEIVKRL QARKHICGMT GDGVNDAPAL
601: KKADIGIAVA DATDAARSAS DIVLTEPGLS VIISAVLTSR AIFQRMKNYT IYAVSITIRI VLGFMLLALI WKFDFPPFMV LIIAILNDGT IMTISKDRVK
701: PSPLPDSWKL AEIFTTGVVL GSYLAMMTVI FFWAAYKTNF FPRVFGVSTL EKTAHDDFRK LASAIYLQVS TISQALIFVT RSRGWSYVER PGILLVTAFV
801: IAQLIATLIA VYANWSFAAI EGIGWGWAGV IWLYNIIFYI PLDPIKFLIR YALSGRAWEL VIEQRIAFTR QKDFGKEQRE LQWAHAQRTL HGLQPPDTKM
901: FTERTHFNEL NQMAEEAKRR AEIARLRELH TLKGHVESVL KLKGIDVDTI QQAYTV

Best Arabidopsis Sequence Match ( AT5G62670.1 )
(BLAST)

001: MGDKEEVLEA VLKETVDLEN VPIEEVFESL RCSREGLTTE AADERLALFG HNKLEEKKES KFLKFLGFMW NPLSWVMEAA AIMAIALANG GGKPPDWQDF
101: VGIITLLVIN STISFIEENN AGNAAAALMA RLAPKAKVLR DGRWGEQDAA ILVPGDIISI KLGDIVPADA RLLEGDPLKI DQSSLTGESL PVTKGPGDGV
201: YSGSTCKQGE LEAVVIATGV HTFFGKAAHL VDTTNHVGHF QQVLTAIGNF CICSIAVGMI IEIVVMYPIQ HRAYRPGIDN LLVLLIGGIP IAMPTVLSVT
301: MAIGSHRLSQ QGAITKRMTA IEEMAGMDVL CSDKTGTLTL NKLTVDKNLI EVFTKGVDAD TVVLMAAQAS RLENQDAIDA AIVGMLADPK EARAGVREVH
401: FLPFNPTDKR TALTYIDSDG KMHRVSKGAP EQILNLAHNR AEIERRVHAV IDKFAERGLR SLAVAYQEVP EGTKESAGGP WQFMGLMPLF DPPRHDSAET
501: IRRALNLGVN VKMITGDQLA IGKETGRRLG MGTNMYPSSA LLGQHKDESI GALPIDDLIE KADGFAGVFP EHKYEIVKRL QARKHICGMT GDGVNDAPAL
601: KKADIGIAVA DATDAARSAS DIVLTEPGLS VIISAVLTSR AIFQRMKNYT IYAVSITIRI VLGFMLLALI WKFDFPPFMV LIIAILNDGT IMTISKDRVK
701: PSPLPDSWKL SEIFATGVVF GSYMAMMTVI FFWAAYKTDF FPRTFGVSTL EKTAHDDFRK LASAIYLQVS IISQALIFVT RSRSWSYVER PGMLLVVAFI
801: LAQLVATLIA VYANWSFAAI EGIGWGWAGV IWLYNIVFYI PLDIIKFLIR YALSGRAWDL VIEQRVAFTR QKDFGKEQRE LQWAHAQRTL HGLQAPDAKM
901: FPERTHFNEL SQMAEEAKRR AEIARLRELH TLKGHVESVV RLKGLDIETI QQAYTV

Arabidopsis Description

AHA11ATPase 11, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:Q9LV11]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.