CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

cytosol 2
plastid 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52590	Soybean	cytosol, peroxisome, plasma membrane	99.47	99.47
KRH16128	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.22	94.22
KRH04967	Soybean	plasma membrane	94.01	94.01
VIT_04s0008g02460.t01	Wine grape	cytosol, peroxisome, plasma membrane	91.17	90.88
KRH16408	Soybean	cytosol, extracellular, plasma membrane	17.56	88.83
KRH02845	Soybean	endoplasmic reticulum	88.96	88.77
KRH19045	Soybean	endoplasmic reticulum	88.12	88.3
KRH12255	Soybean	endoplasmic reticulum	88.54	88.17
KRH47385	Soybean	endoplasmic reticulum	84.96	85.14
KRH23631	Soybean	plasma membrane	84.02	84.19
KRH44521	Soybean	endoplasmic reticulum	83.91	84.09
KRH09668	Soybean	endoplasmic reticulum	83.81	83.98
KRH20096	Soybean	endoplasmic reticulum, mitochondrion	82.65	83.0
Bra007845.1-P	Field mustard	cytosol, peroxisome, plasma membrane	83.28	82.85
CDY34767	Canola	peroxisome	83.28	82.85
KRH03539	Soybean	endoplasmic reticulum	82.33	82.68
KRH37283	Soybean	plasma membrane	88.33	82.6
AT2G24520.2	Thale cress	plasma membrane	86.22	82.5
KRH18509	Soybean	endoplasmic reticulum	76.34	81.76
CDX76810	Canola	plasma membrane	72.77	81.03
KRH12960	Soybean	endoplasmic reticulum	73.19	80.74
KRH56972	Soybean	cytosol, peroxisome, plasma membrane	81.07	80.73
KRH54497	Soybean	endoplasmic reticulum, extracellular, mitochondrion, nucleus	80.97	80.54
KRH03407	Soybean	endoplasmic reticulum	80.76	80.42
KRH63412	Soybean	endoplasmic reticulum	80.65	80.23
KRG93484	Soybean	extracellular	79.39	78.97
KRH66539	Soybean	peroxisome, plasma membrane	76.03	76.75
KRH68997	Soybean	plasma membrane	74.87	76.23
KRH48806	Soybean	endoplasmic reticulum	76.55	75.83
CDY08915	Canola	plasma membrane	19.77	66.43
KRH52592	Soybean	extracellular, plasma membrane	5.05	65.75
Zm00001d014347_P002	Maize	cytosol	13.46	64.97
KRH16612	Soybean	peroxisome	18.72	54.94
KRH16357	Soybean	cytosol	7.89	39.06
KRH43127	Soybean	plasma membrane	18.19	23.01
KRH59277	Soybean	mitochondrion	21.24	20.93

Protein Annotations

KEGG:00190+3.6.3.6	Gene3D:1.20.1110.10	EntrezGene:100785442	MapMan:24.1.2.3.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000
EMBL:ACUP02002201	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_04G075100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006139
GO:GO:0006754	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0008553
GO:GO:0009058	GO:GO:0009987	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0046872	GO:GO:0120029	GO:GO:1902600	InterPro:HAD-like_sf	InterPro:HAD_sf
UniProt:I1JUM2	InterPro:IPR023214	InterPro:IPR023299	EnsemblPlants:KRH61927	ProteinID:KRH61927	ProteinID:KRH61927.1
InterPro:P-type_ATPase_IIIA	PFAM:PF00122	PFAM:PF00690	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120
ScanProsite:PS00154	PANTHER:PTHR42861	PANTHER:PTHR42861:SF41	InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784
SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01647	TMHMM:TMhelix	UniParc:UPI000233A96D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:6285850..6293073

Molecular Weight (calculated)

104504.0 Da

IEP (calculated)

6.926

GRAVY (calculated)

0.070

Length

951 amino acids

Sequence
(BLAST)

001: MGGISLEEIK NENVDLEKIP VEEVFESLKC STAGLTSDEG ANRLQVFGPN KLEEKKESKL LKFLGFMWNP LSWVMEAAAI MAIALANGGG RPPDWQDFVG
101: IIALLFINST ISFIEENNAG NAAAALMAGL APKTKVLRDG RWTEQDAAIL VPGDIISIKL GDIIPADARL LEGDALSVDQ SALTGESLPV TKNPSEEVFS
201: GSTVKKGEIE AVVIATGVHT FFGKAAHLVD STNQVGHFQK VLTAIGNFCI CSIAVGIIIE LIVMYPIQHR KYRDGIDNLL VLLIGGIPIA MPTVLSVTMA
301: IGSHRLSQQG AITKRMTAIE EMAGMDVLCS DKTGTLTLNK LSVDKNLIEV FAKGVEKDYV ILLAARASRT ENQDAIDAAI VGMLADPKEA RAGIREVHFL
401: PFNPVDKRTA LTYIDSDGNW HRSSKGAPEQ ILNLCNCKED VRKRVHGTID KFAERGLRSL GVARQEVPEK NKDSPGAPWQ FVGLLPLFDP PRHDSAETIT
501: RALNLGVNVK MITGDQLAIA KETGRRLGMG TNMYPSSSLL GQSKDAAVSA VPVDELIEKA DGFAGVFPEH KYEIVKRLQE RKHICGMTGD GVNDAPALKK
601: ADIGIAVADA TDAARSASDI VLTEPGLSVI ISAVLTSRAI FQRMKNYTIY AVSITIRIVF GFMFIALIWK FDFAPFMVLI IAILNDGTIM TISKDRVKPS
701: PMPDSWKLRE IFATGIVLGS YMALMTVVFF WIMKDTDFFS DKFGVRSIRN SPGEMMAALY LQVSIISQAL IFVTRSRSWS YVERPGLLLL SAFMIAQLVA
801: TFLAVYANWG FARIQGMGWG WAGVIWLYSL VTYIPLDILK FAIRYVLSGK AWDNLLENKT AFTTKKDYGK EEREAQWATA QRTLHGLQPP ETTNLFNDKN
901: SYRELSEIAE QAKRRAEVAR LRELHTLKGH VESVVKLKGL DIDTIQQHYT V

Best Arabidopsis Sequence Match ( AT2G24520.2 )
(BLAST)

001: MEMEKEVVIF LHFHLLFTTI LNLFSFSSSS LSFFPASLWR LPPGKGSELD HIKNESVDLV RIPMEEVFEE LKCTKQGLTA NEASHRLDVF GPNKLEEKKE
101: SKLLKFLGFM WNPLSWVMEV AALMAIALAN GGGRPPDWQD FVGIVCLLLI NSTISFIEEN NAGNAAAALM AGLAPKTKVL RDNQWSEQEA SILVPGDVIS
201: IKLGDIIPAD ARLLDGDPLK IDQSSLTGES IPVTKNPSDE VFSGSICKQG EIEAIVIATG VHTFFGKAAH LVDNTNQIGH FQKVLTSIGN FCICSIALGI
301: IVELLVMYPI QRRRYRDGID NLLVLLIGGI PIAMPSVLSV TMATGSHRLF QQGAITKRMT AIEEMAGMDV LCCDKTGTLT LNKLTVDKNL VEVFAKGVGK
401: EHVFLLAARA SRIENQDAID AAIVGMLADP KEARAGVREV HFFPFNPVDK RTALTYVDSD GNWHRASKGA PEQILNLCNC KEDVRRKVHG VIDKFAERGL
501: RSLAVARQEV LEKKKDAPGG PWQLVGLLPL FDPPRHDSAE TIRRALNLGV NVKMITGDQL AIGKETGRRL GMGTNMYPSS ALLGQVKDSS LGALPVDELI
601: EKADGFAGVF PEHKYEIVHR LQQRNHICGM TGDGVNDAPA LKKADIGIAV VDATDAARGA SDIVLTEPGL SVIISAVLTS RAIFQRMKNY TIYAVSITIR
701: IVFGFMFIAL IWQFDFSPFM VLIIAILNDG TIMTISKDRM KPSPQPDSWK LRDIFSTGVV LGGYQALMTV VFFWVMKDSD FFSNYFGVRP LSQRPEQMMA
801: ALYLQVSIIS QALIFVTRSR SWSYAECPGL LLLGAFVIAQ LVATFIAVYA NWSFARIEGA GWGWAGVIWL YSFLTYIPLD LLKFGIRYVL SGKAWLNLLE
901: NKTAFTTKKD YGKEEREAQW AAAQRTLHGL QPAEKNNIFN EKNSYSELSQ IAEQAKRRAE VVRLREINTL KGHVESVVKL KGLDIDTIQQ HYTV

Arabidopsis Description

AHA5H(+)-ATPase 5 [Source:TAIR;Acc:AT2G24520]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.