CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

cytosol 2
plastid 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03539	Soybean	endoplasmic reticulum	97.89	97.89
KRH12960	Soybean	endoplasmic reticulum	82.15	90.26
CDY69631	Canola	cytosol, peroxisome, plasma membrane	47.84	86.45
CDY67606	Canola	peroxisome	45.93	85.8
Solyc07g005040.2.1	Tomato	cytosol, plasma membrane	35.37	85.68
Bra008288.1-P	Field mustard	cytosol, peroxisome, plasma membrane	84.9	84.81
AT3G42640.1	Thale cress	peroxisome	84.69	84.6
PGSC0003DMT400030913	Potato	cytosol, peroxisome, plasma membrane	84.16	83.81
CDX93092	Canola	peroxisome	83.84	83.67
Bra013168.1-P	Field mustard	peroxisome	83.84	83.67
CDY50939	Canola	peroxisome	83.74	83.56
AT2G07560.1	Thale cress	peroxisome	83.42	83.25
KRH52590	Soybean	cytosol, peroxisome, plasma membrane	83.42	83.07
KRH61927	Soybean	endoplasmic reticulum, mitochondrion	83.0	82.65
KRH04967	Soybean	plasma membrane	83.0	82.65
KRH16128	Soybean	endoplasmic reticulum, mitochondrion, nucleus	82.79	82.44
KRH12255	Soybean	endoplasmic reticulum	82.89	82.2
KRH02845	Soybean	endoplasmic reticulum	82.68	82.16
KRH47385	Soybean	endoplasmic reticulum	82.05	81.88
KRH19045	Soybean	endoplasmic reticulum	81.84	81.66
KRH23631	Soybean	plasma membrane	81.63	81.45
KRH09668	Soybean	endoplasmic reticulum	81.52	81.35
PGSC0003DMT400020414	Potato	plasma membrane	78.78	80.74
KRH44521	Soybean	endoplasmic reticulum	80.78	80.61
Solyc12g010360.1.1	Tomato	plasma membrane	78.56	80.52
KRH18509	Soybean	endoplasmic reticulum	73.5	78.38
KRH54497	Soybean	endoplasmic reticulum, extracellular, mitochondrion, nucleus	78.25	77.51
KRH56972	Soybean	cytosol, peroxisome, plasma membrane	78.14	77.49
KRH63412	Soybean	endoplasmic reticulum	78.14	77.41
KRH37283	Soybean	plasma membrane	83.0	77.29
KRH03407	Soybean	endoplasmic reticulum	77.82	77.17
KRG93484	Soybean	extracellular	76.77	76.05
KRH16408	Soybean	cytosol, extracellular, plasma membrane	14.99	75.53
KRH66539	Soybean	peroxisome, plasma membrane	73.5	73.89
KRH68997	Soybean	plasma membrane	72.76	73.77
KRH48806	Soybean	endoplasmic reticulum	73.81	72.81
VIT_02s0488g00010.t01	Wine grape	cytosol	12.46	63.44
KRH52592	Soybean	extracellular, plasma membrane	4.22	54.79
KRH16612	Soybean	peroxisome	15.84	46.3
KRH16357	Soybean	cytosol	7.39	36.46
Os11t0485200-01	Rice	extracellular	32.1	32.94
HORVU4Hr1G086810.1	Barley	peroxisome, plasma membrane	14.04	31.74
Zm00001d027304_P026	Maize	plasma membrane	29.78	31.65
KXG40399	Sorghum	plasma membrane	29.14	30.98
Os03t0107100-00	Rice	mitochondrion	12.78	28.88
KRH43127	Soybean	plasma membrane	17.53	22.07
KRH59277	Soybean	mitochondrion	20.17	19.79

Protein Annotations

KEGG:00190+3.6.3.6	Gene3D:1.20.1110.10	EntrezGene:100798717	MapMan:24.1.2.3.1	Gene3D:3.40.1110.10	EMBL:ACUP02008239
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlantsGene:GLYMA_13G156000
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006139	GO:GO:0006754	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0008553	GO:GO:0009058	GO:GO:0009987
GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0046872
GO:GO:0120029	GO:GO:1902600	InterPro:HAD-like_sf	UniProt:I1LZM3	InterPro:IPR023299	EnsemblPlants:KRH20096
ProteinID:KRH20096	ProteinID:KRH20096.1	InterPro:P-type_ATPase_IIIA	PFAM:PF00122	PFAM:PF00690	PFAM:PF00702
PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154	PANTHER:PTHR42861	PANTHER:PTHR42861:SF40	InterPro:P_typ_ATPase
SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01647
TMHMM:TMhelix	UniParc:UPI000233B21B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:27104338..27109785

Molecular Weight (calculated)

103791.0 Da

IEP (calculated)

5.785

GRAVY (calculated)

0.091

Length

947 amino acids

Sequence
(BLAST)

001: MASDISFEDL KNENVDLEHI PIEEVFKQLK CTREGLTSAE GEKRLQVFGP NKLEEKTDSK LLKFLGFMWN PLSWVMEVAA IMAIVLANGG GKPPDWQDFV
101: GIVVLLIINS TISFIEENNA GNAAAALMAG LAPKTKVLRD GKWSEEEAAL LVPGDLISIK LGDIVPADAR LLEGDPLKID QSALTGESLP VTKNPGSEVF
201: SGSTCKQGEI EAVVIATGVH TFFGKAAHLV DSTNNVGHFQ KVLTSIGNFC ICSIAIGMLI EIIVMYPIQQ RAYRDGIDNL LVLLIGGIPI AMPTVLSVTM
301: AIGSHRLSEQ GAITKRMTAI EEMAGMDVLC SDKTGTLTLN KLTVDKSLIE VFPTGMDKDT LVLYAARASR TENQDAIDAS IVGMLSDPKE ARAGITEVHF
401: LPFNPVDKRT AITYIDGQGN WHRSSKGAPE QIIELCELKG EVLKKAHKVI DEYANRGLRS LGVSRQTVSE KNKESAGESW EFLGLLPLFD PPRHDSAETI
501: RRALDLGVNV KMITGDQLAI GKETGRRLGM GTNMYPSSSL LGNSKDPAIA SIPVDELIEK ADGFAGVFPE HKYEIVKRLQ EMKHICGMTG DGVNDAPALK
601: KADIGIAVAD ATDAARSASD IVLTEPGLSV IVSAVLTSRA IFQRMKNYTI YAVSITIRIV FGFMLVALIW KFDFSPFMVL IIAILNDGTI MTISKDRVKP
701: SPLPDSWKLK EIFATGVVLG AYMAIITVVF FFLVHDTDFF TRVFGVEPIV DNEEQLNSAL YLQVSIISQA LIFVTRSRSW SYVERPGILL ITAFFAAQLV
801: ATVIAVYAHW DFARVNGVGW GWAGAIWVFS IVTYIPLDIL KFLIRLGLSG RAWDNMLENK TAFTTKKDYG RGEREAEWAV AQRTLHGLQV GESNKANQHD
901: QSEIAEQAKR RAEAARLREL HTLKGHVESV VKLKGIDIDT IQQHYTL

Best Arabidopsis Sequence Match ( AT3G42640.1 )
(BLAST)

001: MATEFSWDEI KKENVDLERI PVEEVFEQLK CSKEGLSSDE GAKRLEIFGA NKLEEKSENK FLKFLGFMWN PLSWVMESAA IMAIVLANGG GKAPDWQDFI
101: GIMVLLIINS TISFIEENNA GNAAAALMAN LAPKTKVLRD GKWGEQEASI LVPGDLISIK LGDIVPADAR LLEGDPLKID QSALTGESLP TTKHPGDEVF
201: SGSTCKQGEI EAVVIATGVH TFFGKAAHLV DSTNNVGHFQ KVLTSIGNFC ICSIGLGMLI EILIMYPIQH RTYRDGIDNL LVLLIGGIPI AMPTVLSVTM
301: AIGSHRLSQQ GAITKRMTAI EEMAGMDVLC SDKTGTLTLN KLSVDKSLIE VFPKNMDSDS VVLMAARASR IENQDAIDAS IVGMLGDPKE ARAGITEVHF
401: LPFNPVDKRT AITYIDESGD WHRSSKGAPE QIIELCNLQG ETKRKAHEVI DGFAERGLRS LGVAQQTVPE KTKESDGSPW EFVGLLPLFD PPRHDSAETI
501: RRALELGVNV KMITGDQLAI GIETGRRLGM GTNMYPSTSL LGNSKDESLV GIPIDELIEK ADGFAGVFPE HKYEIVKKLQ ERKHICGMTG DGVNDAPALK
601: KADIGIAVAD ATDAARSASD IVLTEPGLSV IISAVLTSRA IFQRMKNYTI YAVSITIRIV LGFMLVALIW RFDFAPFMVL IIAILNDGTI MTISKDRVKP
701: SPVPDSWKLN EIFATGVVLG TYMALTTVLF FWLAHDTDFF SKTFGVRSIQ GNEEELMAAL YLQVSIISQA LIFVTRSRSW SFVERPGFLL LIAFVIAQLV
801: ATLIAVYANW GFARIVGCGW GWAGGIWVYS IITYIPLDIL KFIIRYALTG KAWDNMINQK TAFTTKKDYG KGEREAQWAL AQRTLHGLPP PEAMFNDNKN
901: ELSEIAEQAK RRAEVARLRE LHTLKGHVES VVKLKGLDID TIQQHYTV

Arabidopsis Description

AHA8ATPase 8, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:Q9M2A0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.