CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 2
plastid 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04967	Soybean	plasma membrane	99.26	99.26
KRH61927	Soybean	endoplasmic reticulum, mitochondrion	94.22	94.22
KRH52590	Soybean	cytosol, peroxisome, plasma membrane	94.22	94.22
VIT_04s0008g02460.t01	Wine grape	cytosol, peroxisome, plasma membrane	91.48	91.19
KRH02845	Soybean	endoplasmic reticulum	90.01	89.82
KRH12255	Soybean	endoplasmic reticulum	89.8	89.42
KRH19045	Soybean	endoplasmic reticulum	89.06	89.25
KRH47385	Soybean	endoplasmic reticulum	85.49	85.67
KRH44521	Soybean	endoplasmic reticulum	84.65	84.83
KRH09668	Soybean	endoplasmic reticulum	84.33	84.51
KRH23631	Soybean	plasma membrane	84.23	84.4
Bra007845.1-P	Field mustard	cytosol, peroxisome, plasma membrane	84.65	84.2
CDY34767	Canola	peroxisome	84.65	84.2
AT2G24520.2	Thale cress	plasma membrane	87.59	83.8
KRH37283	Soybean	plasma membrane	89.48	83.68
KRH20096	Soybean	endoplasmic reticulum, mitochondrion	82.44	82.79
CDX76810	Canola	plasma membrane	74.13	82.55
KRH16408	Soybean	cytosol, extracellular, plasma membrane	16.3	82.45
KRH03539	Soybean	endoplasmic reticulum	81.91	82.26
KRH54497	Soybean	endoplasmic reticulum, extracellular, mitochondrion, nucleus	82.33	81.9
KRH56972	Soybean	cytosol, peroxisome, plasma membrane	82.23	81.88
KRH63412	Soybean	endoplasmic reticulum	82.12	81.69
KRH03407	Soybean	endoplasmic reticulum	82.02	81.68
KRH18509	Soybean	endoplasmic reticulum	76.13	81.53
KRH12960	Soybean	endoplasmic reticulum	72.45	79.93
KRG93484	Soybean	extracellular	79.71	79.29
KRH68997	Soybean	plasma membrane	74.87	76.23
KRH66539	Soybean	peroxisome, plasma membrane	75.39	76.11
KRH48806	Soybean	endoplasmic reticulum	76.03	75.31
CDY08915	Canola	plasma membrane	20.08	67.49
Zm00001d014347_P002	Maize	cytosol	13.88	67.01
KRH52592	Soybean	extracellular, plasma membrane	4.94	64.38
KRH16612	Soybean	peroxisome	19.14	56.17
KRH16357	Soybean	cytosol	7.99	39.58
KRH43127	Soybean	plasma membrane	18.51	23.4
KRH59277	Soybean	mitochondrion	21.45	21.14

Protein Annotations

KEGG:00190+3.6.3.6	Gene3D:1.20.1110.10	EntrezGene:100791692	MapMan:24.1.2.3.1	Gene3D:3.40.1110.10	EMBL:ACUP02008788
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ncoils:Coil
EnsemblPlantsGene:GLYMA_14G134100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006139	GO:GO:0006754
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0008553	GO:GO:0009058
GO:GO:0009987	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0046872	GO:GO:0120029	GO:GO:1902600	InterPro:HAD-like_sf	UniProt:I1M9S1	InterPro:IPR023299
EnsemblPlants:KRH16128	ProteinID:KRH16128	ProteinID:KRH16128.1	InterPro:P-type_ATPase_IIIA	PFAM:PF00122	PFAM:PF00690
PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154	PANTHER:PTHR42861	PANTHER:PTHR42861:SF41
InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR01494
TIGRFAMs:TIGR01647	TMHMM:TMhelix	UniParc:UPI000233BF69	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:+:23324171..23333995

Molecular Weight (calculated)

104654.0 Da

IEP (calculated)

7.228

GRAVY (calculated)

0.062

Length

951 amino acids

Sequence
(BLAST)

001: MGGISLEEIK NENVDLERIP IEEVFEQLKC SRAGLTSEEG ANRLQVFGPN KLEEKKESKF LKFLGFMWNP LSWVMEAAAI MAIALANGGG RPPDWQDFVG
101: IIALLVINST ISFIEENNAG NAAAALMAGL APKTKVLRDN RWSEQDAAIL VPGDIISIKL GDIIPADARL LEGDPLSVDQ SALTGESLPV TKSPSDEVFS
201: GSTVKKGEIE AVVIATGVHT FFGKAAHLVD STNQVGHFQK VLTAIGNFCI CSIAVGIAIE LIVMYPIQHR RYREGIDNLL VLLIGGIPIA MPTVLSVTMA
301: IGSHRLSQQG AITKRMTAIE EMAGMDVLCS DKTGTLTLNK LSVDRNLIEV FAKGVEKEYV ILLAARASRT ENQDAIDAAI VGMLADPKEA RSGVREVHFL
401: PFNPVDKRTA LTYIDSDGNW HRASKGAPEQ IITLCNCKED VRRKVHAVID KFAERGLRSL GVARQEVPEK SKDSPGGPWQ FVGLLPLFDP PRHDSAETIR
501: RALNLGVNVK MITGDQLAIG KETGRRLGMG TNMYPSSALL GQDKDASISA LPVDELIEKA DGFAGVFPEH KYEIVKRLQE RKHICGMTGD GVNDAPALKK
601: ADIGIAVADA TDAARSASDI VLTEPGLSVI ISAVLTSRAI FQRMKNYTIY AVSITIRIVF GFLFIALIWK FDFAPFMVLI IAILNDGTIM TISKDRVKPS
701: PLPDSWKLRE IFATGVVLGS YMALMTVVFF WAMKDTNFFS NKFGVRPLRD SPDEMMAALY LQVSIISQAL IFVTRSRSWS FVERPGLLLL GAFFIAQLVA
801: TFIAVYANWG FARIKGMGWG WAGVIWLYSV VTYIPLDLLK FAIRYILSGK AWDNLLENKT AFTTKKDYGK EEREAQWAAA QRTLHGLQPP ETSNLFNDKN
901: SYRELSEIAE QAKRRAEVAR LRELHTLKGH VESVVKLKGL DIDTIQQHYT V

Best Arabidopsis Sequence Match ( AT2G24520.2 )
(BLAST)

001: MEMEKEVVIF LHFHLLFTTI LNLFSFSSSS LSFFPASLWR LPPGKGSELD HIKNESVDLV RIPMEEVFEE LKCTKQGLTA NEASHRLDVF GPNKLEEKKE
101: SKLLKFLGFM WNPLSWVMEV AALMAIALAN GGGRPPDWQD FVGIVCLLLI NSTISFIEEN NAGNAAAALM AGLAPKTKVL RDNQWSEQEA SILVPGDVIS
201: IKLGDIIPAD ARLLDGDPLK IDQSSLTGES IPVTKNPSDE VFSGSICKQG EIEAIVIATG VHTFFGKAAH LVDNTNQIGH FQKVLTSIGN FCICSIALGI
301: IVELLVMYPI QRRRYRDGID NLLVLLIGGI PIAMPSVLSV TMATGSHRLF QQGAITKRMT AIEEMAGMDV LCCDKTGTLT LNKLTVDKNL VEVFAKGVGK
401: EHVFLLAARA SRIENQDAID AAIVGMLADP KEARAGVREV HFFPFNPVDK RTALTYVDSD GNWHRASKGA PEQILNLCNC KEDVRRKVHG VIDKFAERGL
501: RSLAVARQEV LEKKKDAPGG PWQLVGLLPL FDPPRHDSAE TIRRALNLGV NVKMITGDQL AIGKETGRRL GMGTNMYPSS ALLGQVKDSS LGALPVDELI
601: EKADGFAGVF PEHKYEIVHR LQQRNHICGM TGDGVNDAPA LKKADIGIAV VDATDAARGA SDIVLTEPGL SVIISAVLTS RAIFQRMKNY TIYAVSITIR
701: IVFGFMFIAL IWQFDFSPFM VLIIAILNDG TIMTISKDRM KPSPQPDSWK LRDIFSTGVV LGGYQALMTV VFFWVMKDSD FFSNYFGVRP LSQRPEQMMA
801: ALYLQVSIIS QALIFVTRSR SWSYAECPGL LLLGAFVIAQ LVATFIAVYA NWSFARIEGA GWGWAGVIWL YSFLTYIPLD LLKFGIRYVL SGKAWLNLLE
901: NKTAFTTKKD YGKEEREAQW AAAQRTLHGL QPAEKNNIFN EKNSYSELSQ IAEQAKRRAE VVRLREINTL KGHVESVVKL KGLDIDTIQQ HYTV

Arabidopsis Description

AHA5H(+)-ATPase 5 [Source:TAIR;Acc:AT2G24520]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.